1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCTGGCTAGCTGTATGCTGGCCTCTGGAAGTGATGATGGGACATTTTCTATTCGTGATCTTAGGTTGCTCAAGgtatgcattttctgagaatattttaaagtgaatattaatattctgcttttgcaatggatttgacctatcccggtaaatctaagcaaagaatggccttttt...
species | Vitis vinifera |
transcript | Vv11s0016g02270.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CTGGAAGTGATGATGGGACGTTTTCTATTCGTGATCTTAGGTTGCTCAAG GATGGAGATTCTGTGGTAGCACATTTTGAATATCATAAACACCCCATTACAEST: gi|110410877|gb|EC976571.1|EC976571
genomic: CTGGAAGTGATGATGGGACATTTTCTATTCGTGATCTTAGGTTGCTCAAGgtatgcattt ... ttttgggcagGATGGAGATTCTGTGGTAGCACATTTTGAATATCATAAACACCCCATTACA
EST: CTGGAAGTGATGATGGGACGTTTTCTATTCGTGATCTTAGGTTGCTCAAG GATGGAGATTCTGTGGTAGCACATTTTGAATATCATAAACACCCCATTACAEST: gi|110362753|gb|EC926305.1|EC926305
genomic: CTGGAAGTGATGATGGGACATTTTCTATTCGTGATCTTAGGTTGCTCAAGgtatgcattt ... ttttgggcagGATGGAGATTCTGTGGTAGCACATTTTGAATATCATAAACACCCCATTACA
EST: CTGGAAGTGATGATGGGACGTTTTCTATTCGTGATCTTAGGTTGCTCAAG GATGGAGATTCTGTGGTAGCACATTTTGAATATCATAAACACCCCATTACAEST: gi|110389219|gb|EC954039.1|EC954039
genomic: CTGGAAGTGATGATGGGACATTTTCTATTCGTGATCTTAGGTTGCTCAAGgtatgcattt ... ttttgggcagGATGGAGATTCTGTGGTAGCACATTTTGAATATCATAAACACCCCATTACA
EST: CTGGAAGTGATGATGGGACGTTTTCTATTCGTGATCTTAGGTTGCTCAAG GATGGAGATTCTGTGGTAGCACATTTTGAATATCATAAACACCCCATTACAEST: gi|110714196|gb|EE090829.1|EE090829
genomic: CTGGAAGTGATGATGGGACATTTTCTATTCGTGATCTTAGGTTGCTCAAGgtatgcattt ... ttttgggcagGATGGAGATTCTGTGGTAGCACATTTTGAATATCATAAACACCCCATTACA
EST: CTGGAAGTGATGATGGGACGTTTTCTATTCGTGATCTTAGGTTGCTCAAG GATGGAGATTCTGTGGTAGCACATTTTGAATATCATAAACACCCCATTACA
genomic: CTGGAAGTGATGATGGGACATTTTCTATTCGTGATCTTAGGTTGCTCAAGgtatgcattt ... ttttgggcagGATGGAGATTCTGTGGTAGCACATTTTGAATATCATAAACACCCCATTACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGGCTAGCTGTATGCTGGCCTCTGGAAGTGATGATGGGACATTTTCTATTCGTGATCTTAGGTTGCTCAAGgtatgcattttctgagaatattttaaagtgaatattaatattctgcttttgcaatggatttgacctatcccggtaaatctaagcaaagaatggccttttt
- - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagtgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctatccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagcaaa