Sequence
atgc intronic sequence ATGC exonic sequenceCTGTCAAAGGATATATATGATGAAAATGAAGATACATCTTATTCATGGGTTCGGGAGTACCATTGGGATgtacgtgccaatattttttttgaaaattccctcagctatcatttttataatactacttgaaggtgttttcaatgtctcaacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g03510.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA08G21490.2 (Glycine max), 5'ss of exon 11
CTGTCAAAGGATATATATGATGAAAATGAAGATACATCTTATTCATGGGTTCGGGAGTACCATTGGGATgtacgtgccaatattttt----tttgaaaattccctcagctatcatttttataatactacttgaaggtgt--tttcaatgtctcaacag-------------------------------------------------------------------
||||||||||||||||||||||||||||||||| || || || ||| |||| ||||| |||||||||||| || |||||||| || || | | || | | || || || || | | || | | | | |
CTGTCAAAGGATATATATGATGAAAATGAAGATGTCTCGTACTCTTGGATTCGCGAGTATCATTGGGATgtatgtagaaatattttaaaaattcaaagaatatagcataaaattacatcatgatttggttttaaatttccatatctaattttaagttgttaacccttttaatgttaaatatattctttttaacactattctgacatttttataatatcttaatag
upper sequence: Vv09s0002g03510.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA07G01830.3 (Glycine max), 5'ss of exon 10
CTGTCAAAGGATATATATGATGAAAATGAAGATACATCTTATTCATGGGTTCGGGAGTACCATTGGGATgtacgtgccaatattttt----tttgaaaattccctcagctatcatttttataatactacttgaaggtgttttcaatgtctcaacag----------------------------------------------------------------------------
||||||||||||||||||||||||||||||||| || || || ||| | || ||||| |||||||||||| || |||||||| || || | | || | | || || || || ||||| || ||| |
CTGTCAAAGGATATATATGATGAAAATGAAGATGTCTCGTACTCTTGGATACGCGAGTATCATTGGGATgtatgtagaaatattttaaaaattcaaagaatataccataaaattacatcatgatttcgttttaaa---ttttccatatctaattttaagttgttaaccctcttaatgttaaaatatatattttttttaacactattctgacatttttgtaacatcttaatagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|349828356|gb|FQ416309.1|FQ416309EST: ATGAAAATGAAGATACATCTTATTCATGGGTTCGGGAGTACCATTGGGAT GTACGGGGTGATGATGCAGATGACCCCACGACATATCTCGTTTCATTTAAT
genomic: ATGAAAATGAAGATACATCTTATTCATGGGTTCGGGAGTACCATTGGGATgtacgtgcca ... gtctcaacagGTACGGGGTGATGATGCAGATGACCCCACGACATATCTCGTTTCATTTAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGTCAAAGGATATATATGATGAAAATGAAGATACATCTTATTCATGGGTTCGGGAGTACCATTGGGATgtacgtgccaatattttttttgaaaattccctcagctatcatttttataatactacttgaaggtgttttcaatgtctcaacag
- - - - - - - - - - - - - TGAAGA