Sequence
atgc intronic sequence ATGC exonic sequenceCATATTTTTGAGCATTCCAACTATGCTTGATGCATCATTGGCTCCAGAAGGTCGCCATATTCTTCATATTTTTACAACTTCTCCCATAGAGGACTGGAAGgtgatcttaatttggacaattaattttgcacagctatgtcttatggtgatcttgattatgcaatatccaccacttacataaattcttagttgacatagaaatgaatctatcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0032g00800.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os11g36440.1 (Oryza sativa), 5'ss of exon 9
CATATTTTTGAGCATTCCAACTATGCTTGATGCATCATTGGCTCCAGAAGGTCGCCATATTCTTCATATTTTTACAACTTCTCCCATAGAGGACTGGAAGgtgatcttaatttggacaattaattttgcacagctatgtcttatggtgatcttgattatgcaatatccaccact-tacataaattcttagttgacatagaaatgaatctatcag
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CATATTTTTAAGTATCCCTACAGTGCTTGACCCATCCTTGGCTCCCGAAGGACACCATATACTTCATATTTTTACAACTGCAGGGATAGAGGATTGGGAAgta----tggactgtgctcttgctgtaatctaatt-tatttcaaattgtgagaaactaagccttttgtaccaatgtacttatttagttatttattcctaatatccacca--cag
upper sequence: Vv08s0032g00800.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA02G34060.1 (Glycine max), 5'ss of exon 9
CATATTTTTGAGCATTCCAACTATGCTTGATGCATCATTGGCTCCAGAAGGTCGCCATATTCTTCATATTTTTACAACTTCTCCCATAGAGGACTGGAAGgtgatcttaatttggacaattaattttgcacagctatgtcttatggtgatcttgattatgcaatatccaccactt-acataaattcttagttgacatagaaatgaatctatcag---------------------------------------------------------
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TATCTTTCTAAGTATACCAACTGTTCTTGATTCATCATTGGCTCCTGAAGGCCGTCATATCCTTCATATATTCACAACTTCTTCCATGGAGGACTGGGAGgtaggc--aatactgaatactgagtacttataaacaaagttgaagattttcatg-ttgcttgct-tctatgactttagattttttttttttttgcctcctgttttattcatttgcagattagtttatgcataaaatctcaatatcaaatatgtcattgttttatgtcctag
upper sequence: Vv08s0032g00800.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA10G10990.1 (Glycine max), 5'ss of exon 9
CATATTTTTGAGCATTCCAACTATGCTTGATGCATCATTGGCTCCAGAAGGTCGCCATATTCTTCATATTTTTACAACTTCTCCCATAGAGGACTGGAAGgtgatcttaatttggacaattaattttgcacagctatgtcttatggtgatcttgattatgca-atatccaccacttacataaattcttagttgacatagaaatgaatctatcag----------------------------------------------------------------
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TATCTTTCTAAGTATACCAACTGTTCTTGATTCATCATTGGCTCCTGAAGGCCGTCATATCCTTCATATATTCACAACTTCTTCTGTGGAGGACTGGGAGgtaggcaatact-gaataatgattactggtaaacaaagt----tgaagattttcacgttgcttgcttctatgacttatagttttttttgtttttctttttgcctgctgttttactcatttgcagattagtttatgcttaaaatctcaatatcaaatatgtcactgttttctgtgctag
upper sequence: Vv08s0032g00800.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT1G06820.1 (Arabidopsis thaliana), 5'ss of exon 9
CATATTTTTGAGCATTCCAACTATGCTTGATGCATCATTGGCTCCAGAAGGTCGCCATATTCTTCATATTTTTACAACTTCTCCCATAGAGGACTGGAAGgtgatcttaatttggacaatta--attttgcacagcta------tgtcttatggtgatcttgattatgcaatatccaccacttacataaattcttagttgacatagaaatgaatctatcag
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TATTTTCCTCAGCATTCCAACCATTCTTGATTCATCTTTGGCTCCAGATGGTCGACATATACTTCACATATTTACAACTTCGTCCATTGAGGATTGGGAGgtaaggcta-ctaatattattgctattttccttagctgtagaattatcctattgagtttttattgatttgctcatctttgttta--tcaattcgtctatattttggtactag---------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110389204|gb|EC954024.1|EC954024EST: GTCGCCATATTCTTCATATTTTTACAACTTCTCCCATAGAGGACTGGAAG GGGCTCCCTCTAAAAGACTATGAGGCAAAGAAGGAACTTGTGGCAGATGAA
genomic: GTCGCCATATTCTTCATATTTTTACAACTTCTCCCATAGAGGACTGGAAGgtgatcttaa ... aatctatcagGGACTCCCTCTAAAAGACTATGAGGCAAAGAAAGAACTTGTGGCAGATGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CATATTTTTGAGCATTCCAACTATGCTTGATGCATCATTGGCTCCAGAAGGTCGCCATATTCTTCATATTTTTACAACTTCTCCCATAGAGGACTGGAAGgtgatcttaatttggacaattaattttgcacagctatgtcttatggtgatcttgattatgcaatatccaccacttacataaattcttagttgacatagaaatgaatctatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG