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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCTATAATGAAACGCCTGCGGCATCCGAATATCGTTCTTTTTATGGGTGCAGTTACGCAGCCCCCAAATTTGTCCATAGTTACAGAATATTTATCAAGgtttttaattttattcccaaacaatccttttttcttttcatttttttttattaaaatgagatattggtattatttattaagtttctgttccctgaactaaatactagttttgaactgcag

Basic information

species Vitis vinifera
transcript Vv08s0007g03910.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g03910.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os09g39320.1 (Oryza sativa), 5'ss of exon 10
TTTCTATAATGAAACGCCTGCGGCATCCGAATATCGTTCTTTTTATGGGTGCAGTTACGCAGCCCCCAAATTTGTCCATAGTTACAGAATATTTATCAAGgt----ttttaattttattcccaaacaatccttttttcttttcatttttttttattaaaatgagatattggtattatttattaagtttctgttccctgaactaaatactagttttgaactgcag
|| | ||||||||| ||||| | ||||| ||||| |||||||| |||||||| |||||  |||| || ||  | || |||||||||||||| || |||||||    || | || |   | | |   | ||| ||  |  | ||| |  |||      || |   || |  ||        | | |    | |||  || |                        
TTGCAATAATGAAAAGCCTGAGACATCCAAATATTGTTCTTTTCATGGGTGCTGTTACTGAGCCTCCCAACCTATCAATAGTTACAGAATACTTGTCAAGgtatggttgtgatgtgccttcaagctattccgttaattatctcaatcatttgatagcaagtttaatgt--gtccagcaagtgatgccatttttcattgcag-----------------------

upper sequence: Vv08s0007g03910.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: LOC_Os02g32610.2 (Oryza sativa), 5'ss of exon 10
TTTCTATAATGAAACGCCTGCGGCATCCGAATATCGTTCTTTTTATGGGTGCAGTTACGCAGCCCCCAAATTTGTCCATAGTTACAGAATATTTATCAAGgtttttaattttattcccaaacaatccttttttcttttcatttttttttattaaaatgagatattggtattatttattaagtttctgttccctgaactaaatactagttttgaactgcag
|| | || |||||| | ||||| ||||| || || || |||||||||||||| ||||| ||||| |||||  | || || || ||||||||| ||||||||| | |             |||  ||   ||    |||||   ||    ||  |||  |  |  |  ||    |  |  || || |  | ||   |  |  |  |  | ||||| |||||
TTGCAATTATGAAAAGTCTGCGCCATCCAAACATTGTCCTTTTTATGGGTGCTGTTACTCAGCCACCAAAACTTTCGATTGTGACAGAATATCTATCAAGgtgtgt-----------tgaactttctgattactatttcaaaattg---atgtaaactatgtgct--tacctctagtctagcttgtagttcccacataagttttttttcttgaa-tgcag

upper sequence: Vv08s0007g03910.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT5G03730.2 (Arabidopsis thaliana), 5'ss of exon 9
TTTCTATAATGAAACGCCTGCGGCATCCGAATATCGTTCTTTTTATGGGTGCAGTTACGCAGCCCCCAAATTTGTCCATAGTTACAGAATATTTATCAAGgttt--ttaattttattcccaaacaatccttttttcttttcatttttttttattaaaatgaga-tattggtattatttattaagtttctgttccctgaactaaatactagttttgaactgcag
|| | |||||||||||||| || || || || || ||||| || |||||||| || || || || ||||||||||| ||||| ||||||||||| |||||||    ||| ||  |||   ||    |  | |  |   |  |   ||||    || |||||   || |   || |||| ||                                          
TTGCGATAATGAAACGCCTTCGCCACCCTAACATTGTTCTCTTCATGGGTGCGGTCACTCAACCTCCAAATTTGTCAATAGTGACAGAATATTTGTCAAGgtacaattacttggatttggaaggtttgatgtactgagtgtagaattttggcctataatgactctaataccatgatttctttcaaacag----------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30321464|gb|CD004726.1|CD004726
EST:     GCAGTTACGCAGCCCCCAAATTTGTCCATAGTTACAGAATATTTATCAAG                         AGGTAGCTTATATAGGCTTTTGCACAAACCTGGTGCAAGAGAAATGTTAGA
genomic: GCAGTTACGCAGCCCCCAAATTTGTCCATAGTTACAGAATATTTATCAAGgtttttaatt ... tgaactgcagAGGTAGCTTATATAGGCTTTTGCACAAACCTGGTGCAAGAGAAATGTTAGA
EST: gi|27580407|gb|CB003102.1|CB003102
EST:     CCCAAATTTGTCCATAGTTACAGAATATTTATCAAG                         AGGTAGCTTATATAGGCTTTTGCACAAACCTGGTGCAAGAGAAATGTTAGA
genomic: CCCAAATTTGTCCATAGTTACAGAATATTTATCAAGgtttttaatt ... tgaactgcagAGGTAGCTTATATAGGCTTTTGCACAAACCTGGTGCAAGAGAAATGTTAGA
EST: gi|27579678|gb|CB002373.1|CB002373
EST:     GCAGTTACGCAGCCCCCAAATTTGTCCATAGTTACAGAATATTTATCAAG                         AGGTAGCTTATATAGGCTTTTGCACAAACCTGGTGCAAGAGAAATGTTAGA
genomic: GCAGTTACGCAGCCCCCAAATTTGTCCATAGTTACAGAATATTTATCAAGgtttttaatt ... tgaactgcagAGGTAGCTTATATAGGCTTTTGCACAAACCTGGTGCAAGAGAAATGTTAGA
EST: gi|32249917|gb|CD715736.1|CD715736
EST:     CCCAAATTTGTCCATAGTTACAGAATATTTATCAAG                         AGGNTAGCTTATATAGGCTTTTGCACAAACCTGGTGCAAGAGAAATGTTAG
genomic: CCCAAATTTGTCCATAGTTACAGAATATTTATCAAGgtttttaatt ... tgaactgcagAGG-TAGCTTATATAGGCTTTTGCACAAACCTGGTGCAAGAGAAATGTTAG
EST: gi|27580570|gb|CB003265.1|CB003265
EST:     CCCAAATTTGTCCATAGTTACAGAATATTTATCAAG                         AGGTAGCTTATATAGGCTTTTGCACAAACCTGGTGCAAGAGAAATGTTAGA
genomic: CCCAAATTTGTCCATAGTTACAGAATATTTATCAAGgtttttaatt ... tgaactgcagAGGTAGCTTATATAGGCTTTTGCACAAACCTGGTGCAAGAGAAATGTTAGA