1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CTTTGCTTTCATTGTTGATTGCAAGGACCCAAAAGCATGTACTGTGCTGTTGAGAGGTCCCAGTAAAGATCTTTTGAATGAAGTGGAAAGAAATTTGCAGgtatttttttttcttttttatttttatttaggactcaaattttcaatcaagaatgaaattatgttttctgaagcatgtctgcatgacag
species | Vitis vinifera |
transcript | Vv07s0130g00410.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TGAAAGGTCCCAGTAAAGATCTTTTGAATGAAGTGGAAAGAAATTTGCAG GATGCCCTGTGTGTAGCTAGAAACATAATCAAGAATCCTAAACTAGTTCCGEST: gi|161716160|gb|FC065852.1|FC065852
genomic: TGAGAGGTCCCAGTAAAGATCTTTTGAATGAAGTGGAAAGAAATTTGCAGgtattttttt ... tgcatgacagGATGCCATGTGTGTAGCTAGAAACATAATCAAGAATCCTAAACTAGTTCCG
EST: TGAGAGGTCCCAGTAAAGATCTTTTGAATGAAGTGGAAAGAAATTTGCAG GATGCCATGTGTGTAGCTAGAAACATAATCAAGAATCCTAAACTAGTTCCGEST: gi|33405452|gb|CF211079.1|CF211079
genomic: TGAGAGGTCCCAGTAAAGATCTTTTGAATGAAGTGGAAAGAAATTTGCAGgtattttttt ... tgcatgacagGATGCCATGTGTGTAGCTAGAAACATAATCAAGAATCCTAAACTAGTTCCG
EST: TGAGAGGTCCCAGTAAAGATCTTTTGAATGAAGTGGAAAGAAATTTGCAG GATGCCATGTGTGTAGCTAGAAACATAATCAAGAATCCTAAACTAGTTCCGEST: gi|349823591|gb|FQ415001.1|FQ415001
genomic: TGAGAGGTCCCAGTAAAGATCTTTTGAATGAAGTGGAAAGAAATTTGCAGgtattttttt ... tgcatgacagGATGCCATGTGTGTAGCTAGAAACATAATCAAGAATCCTAAACTAGTTCCG
EST: TGAGAGGTCCCAGTAAAGATCTTTTGAATGAAGTGGAAAGAAATTTGCAG GATGCCATGTGTGTAGCTAGAAACATAATCAAGAATCCTAAACTAGTTCCGEST: gi|351034297|gb|FQ448094.1|FQ448094
genomic: TGAGAGGTCCCAGTAAAGATCTTTTGAATGAAGTGGAAAGAAATTTGCAGgtattttttt ... tgcatgacagGATGCCATGTGTGTAGCTAGAAACATAATCAAGAATCCTAAACTAGTTCCG
EST: TGAGAGGTCCCAGTAAAGATCTTTTGAATGAAGTGGAAAGAAATTTGCAG GATGCCATGTGTGTAGCTAGAAACATAATCAAGAATCCTAAACTAGTTCCGEST: gi|110426184|gb|EC992582.1|EC992582
genomic: TGAGAGGTCCCAGTAAAGATCTTTTGAATGAAGTGGAAAGAAATTTGCAGgtattttttt ... tgcatgacagGATGCCATGTGTGTAGCTAGAAACATAATCAAGAATCCTAAACTAGTTCCG
EST: TGAGAGGTCCCAGTAAAGATCTTTTGAATGAAGTGGAAAGAAATTTGCAG GATGCCATGTGTGTAGCTAGAAACATAATCAAGAATCCTAAACTAGTTCCG
genomic: TGAGAGGTCCCAGTAAAGATCTTTTGAATGAAGTGGAAAGAAATTTGCAGgtattttttt ... tgcatgacagGATGCCATGTGTGTAGCTAGAAACATAATCAAGAATCCTAAACTAGTTCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTGCTTTCATTGTTGATTGCAAGGACCCAAAAGCATGTACTGTGCTGTTGAGAGGTCCCAGTAAAGATCTTTTGAATGAAGTGGAAAGAAATTTGCAGgtatttttttttcttttttatttttatttaggactcaaattttcaatcaagaatgaaattatgttttctgaagcatgtctgcatgacag
- - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA