Sequence
atgc intronic sequence ATGC exonic sequenceTTCAAATTTGAGAGGTGGTTCTCAGTCCAGTTTTCAACCTTCAACTGCTGGCATGCAAGAACAAATGAGAAACCAAATGAAAGATCCAGCCATGCGGCAGgtatgttggttcaagtcctgtcattgttatgtatcgagttcttagatgctgacatcattaccttgtgctttacaaatgaattgacatgaatcattcttag...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0009g01020.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA06G46490.1 (Glycine max), 5'ss of exon 9
TTCAAATTTGAGAGGTGGTTCTCAGTCCAGTTTTCAACCTTCAACTGCTGGCATGCAAGAACAAATGAGAAACCAAATGAAAGATCCAGCCATGCGGCAGgtatgttggttcaagtcctgtcattgttatgtatcgagttcttagatgct--gacatcattaccttgtgctt-tacaaatgaattgacatgaatcattcttag
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TTCAAATATGAGAAATGCTTCTCAGTCAAACTTCCCTTCCTCGAGTACCGATCTACAAGAACAGATGAGAAACCAGATGAAAGATCCAGCCATGCGGAAGgtatgcttgt--atttcttgttaaggagataaaatagcctctagctttcttccacatacctggctggaataaatgcaatcaagtttcctcttttacttgtca-
upper sequence: Vv06s0009g01020.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA12G10270.1 (Glycine max), 5'ss of exon 9
TTCAAATTTGAGAGGTGGTTCTCAGTCCAGTTTTCAACCTTCAACTGCTGGCATGCAAGAACAAATGAGAAACCAAATGAAAGATCCAGCCATGCGGCAGgtatgttggttcaagtcctgtcattgttatgtatcgagttcttagatgctgacatcattaccttgtgctttacaaatg-aattgacatgaatcatt--cttag--
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TTCAAATATGAGAAATGCTTCTCAGTCAAACTTCCCTTCCTCAAGTGCCAATCTCCAAGAACAGATGAGAAACCAGATGAAAGATCCAGCTATGCGGAAGgtatgtttgt--atttcttgttaaggagataaaatgatctctagctttcttccaca--tacctggc-tggaataaatgcaatcaacttgccccttttacttgtca
upper sequence: Vv06s0009g01020.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT5G21990.1 (Arabidopsis thaliana), 5'ss of exon 9
TTCAAATTTGAGAGGTGGTTCTCAGTCCAGTTTTCAAC---CTTCAACTGCTGGCATGCAAGAACAAATGAGAAACCAAATGAAAGATCCAGCCATGCGGCAGgtatgttggttcaagtcctgtcattgttatgtatcgagttcttagatgctgacatcattaccttgtgctttacaaatgaattgacatgaatcattcttag
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---GGCTCCAAGAAGCGGTTTCGAACCAAGCATCCCTTCTGCTCCGCCTGCTGACTTACAGGAACAGATGAGAAACCAAATGAAAGATCCAGCGATGCGACAGgtttgatcatt----ttcggtttatgtttt--accaatttagtcaaca-taatgtgattg--ttgatgttcatatagtagtttctctgtat-attggtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110386236|gb|EC950817.1|EC950817EST: GCATGCAAGAACAAATGAGAAACCAAATGAAAGATCCAGCCATGCGGCAG ATGTTCACATCAATGATTAAGAATATGAGTCCAGAAATGATGACAAATATG
genomic: GCATGCAAGAACAAATGAGAAACCAAATGAAAGATCCAGCCATGCGGCAGgtatgttggt ... aaattggcagATGTTCACATCAATGATTAAGAATATGAGTCCAGAAATGATGACAAATATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCAAATTTGAGAGGTGGTTCTCAGTCCAGTTTTCAACCTTCAACTGCTGGCATGCAAGAACAAATGAGAAACCAAATGAAAGATCCAGCCATGCGGCAGgtatgttggttcaagtcctgtcattgttatgtatcgagttcttagatgctgacatcattaccttgtgctttacaaatgaattgacatgaatcattcttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatgaa