1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CAGCTCCTAGGAAGTTGTTGGCATCAGATTCTCGTTTGCGCCCTGATAGATATGCACTTGAAAAGGGAGATCTATCAAAAGCTGGTGCTGAAAAGAGCAGgtctctctcagacatacacatagtggcaagcttatgcatacatttacaataattaaaaagatattagttactagggctctaagacgaacctaatgaaact...
species | Vitis vinifera |
transcript | Vv06s0004g04930.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TATGCACTTGAAAAGGGAGATCTATCAAAAGCTGGTGCTGAAAAGAGCAG TTTGGAGGAGAGGCAAAGAGCAGAAAAGAGAACCCGAGAGGCCAAGGGACAEST: gi|22012903|gb|BQ797937.1|BQ797937
genomic: TATGCACTTGAAAAGGGAGATCTATCAAAAGCTGGTGCTGAAAAGAGCAGgtctctctca ... tacttttcagTTTGGAGGAGAGGCAAAGAGCAGAAAAGAGAAACCGAGAGGCCAAGGGACA
EST: TATGCACTTGAAAAGGGAGATCTATCAAAAGCTGGTGCTGAAAAGAGCAG TTTGGAGGAGAGGCAAAGAGCAGAAAAGAGAAACCGAGAGGCCAAGGGACAEST: gi|33405066|gb|CF210693.1|CF210693
genomic: TATGCACTTGAAAAGGGAGATCTATCAAAAGCTGGTGCTGAAAAGAGCAGgtctctctca ... tacttttcagTTTGGAGGAGAGGCAAAGAGCAGAAAAGAGAAACCGAGAGGCCAAGGGACA
EST: TATGCACTTGAAAAGGGAGATCTATCAAAAGCTGGTGCTGAAAAGAGCAG TTTGGAGGAGAGGCAAAGAGCAGAAAAGAGAAACCGAGAGGCCAAGGGACAEST: gi|110716660|gb|EE091846.1|EE091846
genomic: TATGCACTTGAAAAGGGAGATCTATCAAAAGCTGGTGCTGAAAAGAGCAGgtctctctca ... tacttttcagTTTGGAGGAGAGGCAAAGAGCAGAAAAGAGAAACCGAGAGGCCAAGGGACA
EST: TATGCACTTGAAAAGGGAGATCTATCAAAAGCTGGTGCTGAAAAGAGCAG TTTGGAGGAGAGGCAAAGAGCAGAAAAGAGAAACCGAGAGGCCAAGGGACAEST: gi|33405148|gb|CF210775.1|CF210775
genomic: TATGCACTTGAAAAGGGAGATCTATCAAAAGCTGGTGCTGAAAAGAGCAGgtctctctca ... tacttttcagTTTGGAGGAGAGGCAAAGAGCAGAAAAGAGAAACCGAGAGGCCAAGGGACA
EST: TATGCACTTGAAAAGGGAGATCTATCAAAAGCTGGTGCTGAAAAGAGCAG TTTGGAGGAGAGGCAAAGAGCAGAAAAGAGAAACCGAGAGGCCAAGGGACAEST: gi|110688435|gb|EE066987.1|EE066987
genomic: TATGCACTTGAAAAGGGAGATCTATCAAAAGCTGGTGCTGAAAAGAGCAGgtctctctca ... tacttttcagTTTGGAGGAGAGGCAAAGAGCAGAAAAGAGAAACCGAGAGGCCAAGGGACA
EST: TATGCACTTGAAAAGGGAGATCTATCAAAAGCTGGTGCTGAAAAGAGCAG TTTGGAGGAGAGGCAAAGAGCAGAAAAGAGAAACCGAGAGGCCAAGGGACAEST: gi|110378376|gb|EC943506.1|EC943506
genomic: TATGCACTTGAAAAGGGAGATCTATCAAAAGCTGGTGCTGAAAAGAGCAGgtctctctca ... tacttttcagTTTGGAGGAGAGGCAAAGAGCAGAAAAGAGAAACCGAGAGGCCAAGGGACA
EST: TATGCACTTGAAAAGGGAGATCTATCAAAAGCTGGTGCTGAAAAGAGCAG TTTGGAGGAGAGGCAAAGAGCAGAAAAGAGAAACCGAGAGGCCAAGGGACAEST: gi|110705363|gb|EE082145.1|EE082145
genomic: TATGCACTTGAAAAGGGAGATCTATCAAAAGCTGGTGCTGAAAAGAGCAGgtctctctca ... tacttttcagTTTGGAGGAGAGGCAAAGAGCAGAAAAGAGAAACCGAGAGGCCAAGGGACA
EST: TATGCACTTGAAAAGGGAGATCTATCAAAAGCTGGTGCTGAAAAGAGCAG TTTGGAGGAGAGGCAAAGAGCAGAAAAGAGAAACCGAGAGGCCAAGGGACAEST: gi|30252533|gb|CB970084.1|CB970084
genomic: TATGCACTTGAAAAGGGAGATCTATCAAAAGCTGGTGCTGAAAAGAGCAGgtctctctca ... tacttttcagTTTGGAGGAGAGGCAAAGAGCAGAAAAGAGAAACCGAGAGGCCAAGGGACA
EST: TATGCACTTGAAAAGGGAGATCTATCAAAAGCTGGTGCTGAAAAGAGCAG TTTGGAGGAGAGGCAAAGAGCAGAAAAGAGAAACCGAGAGGCCAAGGGACA
genomic: TATGCACTTGAAAAGGGAGATCTATCAAAAGCTGGTGCTGAAAAGAGCAGgtctctctca ... tacttttcagTTTGGAGGAGAGGCAAAGAGCAGAAAAGAGAAACCGAGAGGCCAAGGGACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGCTCCTAGGAAGTTGTTGGCATCAGATTCTCGTTTGCGCCCTGATAGATATGCACTTGAAAAGGGAGATCTATCAAAAGCTGGTGCTGAAAAGAGCAGgtctctctcagacatacacatagtggcaagcttatgcatacatttacaataattaaaaagatattagttactagggctctaagacgaacctaatgaaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagacga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgaaa