Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGGTTCACCAGTTTTCAATAAACTTGAAGCTCAACTGGCCAGAGCTGCCATGTCACTGCCTGCATCGATAGGCTTTGAGTTTGGCAGTGGCTTTGCAGgtatggaattggtttgtcgtatttgttttaaaaaacccaccaaaaaaaaaaagttctaaggagaacaatgatacttacttttccaagcttctgattgtcattgagaatccttgcag

Basic information

species Vitis vinifera
transcript Vv06s0004g02960.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g02960.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA20G31980.1 (Glycine max), 5'ss of exon 9
CTTGGTTCACCAGTTTTCAATAAACTTGAAGCTCAACTGGCCAGAGCTGCCATGTCACTGCCTGCATCGATAGGCTTTGAGTTTGGCAGTGGCTTTGCAGgta-tggaattggtttgtc-----------gtatttgt-tttaaaaaacccaccaaaaaaaaaaagttctaaggagaacaatgatacttacttt----------tccaagct----tctgattgtcattgagaatccttgcag
|| ||||||||||| ||  | |||||||||||| | ||||| | |||||| |||||| |||||||| | |  |||||| ||||||| ||||| |||||||||| |  || | | || |            ||   | | | ||  |     ||  |  ||| |  | ||  |   |||||||| || || |||           ||  || |    |||||| |        |||| ||  ||
CTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAGCTGGCTAAAGCTGCAATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAGgtactaaaacttgcttatttatacatctgagtgcctttgtctatgattttgactgactaaacagggatc--aattgaacaatgttattttcttgatcacttatatctgaggtgtgttctgatggcttagtgaaatcattatag

upper sequence: Vv06s0004g02960.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA10G35560.1 (Glycine max), 5'ss of exon 9
CTTGGTTCACCAGTTTTCAATAAACTTGAAGCTCAACTGGCCAGAGCTGCCATGTCACTGCCTGCATCGATAGGCTTTGAGTTTGGCAGTGGCTTTGCAGgta-tggaattggtttgt-------------cgtatttgttttaaaaaacccaccaaaaaaaaaaagttctaaggagaacaatgatacttacttttccaa--gcttctgat-tgtcattgagaatccttgcag-----------
|| ||||||||||| ||  | |||||||||||| |||| || | |||||| |||||| |||||||| | |  |||||| ||||||| ||||| |||||||||| |  || | | || |              |   |||| |||  | |    || |  ||| |  | ||  |   |||||||| || || |||   ||   |  |||||  |||  |  |    | | |              
CTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAACTAGCTAAAGCTGCTATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAGgtactaaaacttgcttatgtatatgtccgagtgcccttgtcttatgatattggccgactaaacagggatc--aattgaacaatgttattttcttgatcacttgtgtctgaagtgtgttctaatggcttagtgaaattattatag

upper sequence: Vv06s0004g02960.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT1G48850.3 (Arabidopsis thaliana), 5'ss of exon 9
CTTGGTTCACCAGTTTTCAATAAACTTGAAGCTCAACTGGCCAGAGCTGCCATGTCACTGCCTGCATCGATAGGCTTTGAGTTTGGCAGTGGCTTTGCAGgtatggaattggtttgtcgtatttgttttaaaaaacccaccaaaaaaaaaaagttctaaggagaacaatgatacttacttttccaagcttctgattgtcattgagaatccttgcag
|||||| |||| |||||| |||||||||||||  ||||||| | ||||   ||||| || |||||| | |  || ||||||||||| || |||||||||||||| |||     |  |  | | |  |||    || | |     |||  ||  | ||  ||||    || |  | |||       | |                            
CTTGGTACACCGGTTTTCGATAAACTTGAAGCAGAACTGGCAAAAGCTTGTATGTCGCTACCTGCAACTAAGGGATTTGAGTTTGGAAGCGGCTTTGCAGgtatagaaagttatacttttctctcctttgtccaatcta-----aaatcaacctcctttggagctgtataaatcatacgcaaatgaacccgcag----------------------