1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GAATTGAGGGGAAACTAGAAAACCCTCTGAGATCAGGCTGGCAGCTTGTATTTGTTGACAGGGAGAACGATGTGCTTCTCCTTGGAGACGACCCATGGGAgtaagtatgaaatttatattgaatcatcccataatgttagtaggatttaaagaagtggcctcaattatcctgcgcaaactagggactctagtgttgggttatgatggactgaccatgtgtgattcccatgtgcag
species | Vitis vinifera |
transcript | Vv04s0079g00200.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TTTGTTGACAGGGAGAATGATGTGCTTCTCCTTGGAGACGACCCATGGGA GGCATTTGTGAATAATGTCTGGTACATCAAGATACTTTCACCAGAGGATGTEST: gi|110366379|gb|EC930262.1|EC930262
genomic: TTTGTTGACAGGGAGAACGATGTGCTTCTCCTTGGAGACGACCCATGGGAgtaagtatga ... ccatgtgcagGGCATTTGTGAATAATGTCTGGTACATCAAGATACTTTCACCAGAGGATGT
EST: TCTCCTTGGAGACGACCCATGGGA GGCATTTGTGAATAATGTCTGGTACATCAAGATACTTTCACCAGAGGATGTEST: gi|110376730|gb|EC941802.1|EC941802
genomic: TCTCCTTGGAGACGACCCATGGGAgtaagtatga ... ccatgtgcagGGCATTTGTGAATAATGTCTGGTACATCAAGATACTTTCACCAGAGGATGT
EST: TTTGTTGACAGGGAGAATGATGTGCTTCTCCTTGGAGACGACCCATGGGA GGCATTTGTGAATAATGTCTGGTACATCAAGATACTTTCACCAGAGGATGTEST: gi|87586113|gb|DY474560.1|DY474560
genomic: TTTGTTGACAGGGAGAACGATGTGCTTCTCCTTGGAGACGACCCATGGGAgtaagtatga ... ccatgtgcagGGCATTTGTGAATAATGTCTGGTACATCAAGATACTTTCACCAGAGGATGT
EST: TTTGTTGACAGGGAGAATGATGTGCTTCTCCTTGGAGACGACCCATGGGA GGCATTTGTGAATAATGTCTGGTACATCAAGATACTTTCACCAGAGGATGTEST: gi|110362405|gb|EC925936.1|EC925936
genomic: TTTGTTGACAGGGAGAACGATGTGCTTCTCCTTGGAGACGACCCATGGGAgtaagtatga ... ccatgtgcagGGCATTTGTGAATAATGTCTGGTACATCAAGATACTTTCACCAGAGGATGT
EST: TTTGTTGACAGGGAGAATGATGTGCTTCTCCTTGGAGACGACCCATGGGA GGCATTTGTGAATAATGTCTGGTACATCAAGATACTTTCACCAGAGGATGT
genomic: TTTGTTGACAGGGAGAACGATGTGCTTCTCCTTGGAGACGACCCATGGGAgtaagtatga ... ccatgtgcagGGCATTTGTGAATAATGTCTGGTACATCAAGATACTTTCACCAGAGGATGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATTGAGGGGAAACTAGAAAACCCTCTGAGATCAGGCTGGCAGCTTGTATTTGTTGACAGGGAGAACGATGTGCTTCTCCTTGGAGACGACCCATGGGAgtaagtatgaaatttatattgaatcatcccataatgttagtaggatttaaagaagtggcctcaattatcctgcgcaaactagggactctagtgttgggttatgatggactgaccatgtgtgattcccatgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA