1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTACCATTTAGACCTATGCAAGAATGTCTTTGGCAATGGCATCTATCCTGATGTTGATGCAACAAATATATACTATGGAGGCACAAAAATTGCTGgttcaaacattgacttatttacttttacagttgtctagttttttctttttttcttttctttatttgccccgtactttatgctttagcattctagcccata...
species | Vitis vinifera |
transcript | Vv04s0023g03020.t01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TCCTGATGTTGATGCAACAAATATATACTATGGAGGCACAAAAATTGCTG GTTCAAAAATAATTTTTACGAATGGCTCCCAGGACCCCTGGCGACATGCATEST: gi|22011128|gb|BQ796162.1|BQ796162
genomic: TCCTGATGTTGATGCAACAAATATATACTATGGAGGCACAAAAATTGCTGgttcaaacat ... aaattgccagGTTCAAAAATAATTTTTACGAATGGCTCCCAGGACCCCTGGCGACATGCAT
EST: TCCTGATGTTGATGCAACAAATATATTCTATGGAGGCACAAAAATTGCTG GTTCAAAAATAATTTTTACGAATGGCTCCCAGGACCCCTGGCGACATGCATEST: gi|30126977|gb|CB912316.1|CB912316
genomic: TCCTGATGTTGATGCAACAAATATATACTATGGAGGCACAAAAATTGCTGgttcaaacat ... aaattgccagGTTCAAAAATAATTTTTACGAATGGCTCCCAGGACCCCTGGCGACATGCAT
EST: TCCTGATGTTGATGCAACAAATATATACTATGGAGGCACAAAAATTGCTG GTTCAAAAATAATTTTTACGAATGGCTCCCAGGACCCCTGGCGACATGCATEST: gi|33403028|gb|CF208655.1|CF208655
genomic: TCCTGATGTTGATGCAACAAATATATACTATGGAGGCACAAAAATTGCTGgttcaaacat ... aaattgccagGTTCAAAAATAATTTTTACGAATGGCTCCCAGGACCCCTGGCGACATGCAT
EST: TCCTGATGTTGATGCAACAAATATATACTATGGAGGCACAAAAATTGCTG GTTCAAAAATAATTTTTACGAATGGCTCCCAGGACCCCTGGCGACATGCATEST: gi|33402941|gb|CF208568.1|CF208568
genomic: TCCTGATGTTGATGCAACAAATATATACTATGGAGGCACAAAAATTGCTGgttcaaacat ... aaattgccagGTTCAAAAATAATTTTTACGAATGGCTCCCAGGACCCCTGGCGACATGCAT
EST: TCCTGATGTTGATGCAACAAATATATACTATGGAGGCACAAAAATTGCTG GTTCGATAATAATTTTTACGAATGGCTCCCAGGANCCCTGGCGACATGCATEST: gi|46918655|gb|CN547984.1|CN547984
genomic: TCCTGATGTTGATGCAACAAATATATACTATGGAGGCACAAAAATTGCTGgttcaaacat ... aaattgccagGTTCAAAAATAATTTTTACGAATGGCTCCCAGGACCCCTGGCGACATGCAT
EST: TCCTGATGTTGATGCAACAAATATATACTATGGAGGCACAAAAATTGCTG GTTCAAAAATAATTTTTACGAATGGCTCCCAGGACCCCTGGCGACATGCATEST: gi|110375447|gb|EC940435.1|EC940435
genomic: TCCTGATGTTGATGCAACAAATATATACTATGGAGGCACAAAAATTGCTGgttcaaacat ... aaattgccagGTTCAAAAATAATTTTTACGAATGGCTCCCAGGACCCCTGGCGACATGCAT
EST: TCCTGATGTTGATGCAACAAATATATACTATGGAGGCACAAAAATTGCTG GTTCAAAAATAATTTTTACGAATGGCTCCCAGGACCCCTGGCGACATGCATEST: gi|22012959|gb|BQ797993.1|BQ797993
genomic: TCCTGATGTTGATGCAACAAATATATACTATGGAGGCACAAAAATTGCTGgttcaaacat ... aaattgccagGTTCAAAAATAATTTTTACGAATGGCTCCCAGGACCCCTGGCGACATGCAT
EST: TCCTGATGTTGATGCAACAAATATATACTATGGAGGCACAAAAATTGCTG GTTCAAAAATAATTTTTACGAATGGCTCCCAGGACCCCTGGCGACATGCAT
genomic: TCCTGATGTTGATGCAACAAATATATACTATGGAGGCACAAAAATTGCTGgttcaaacat ... aaattgccagGTTCAAAAATAATTTTTACGAATGGCTCCCAGGACCCCTGGCGACATGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACCATTTAGACCTATGCAAGAATGTCTTTGGCAATGGCATCTATCCTGATGTTGATGCAACAAATATATACTATGGAGGCACAAAAATTGCTGgttcaaacattgacttatttacttttacagttgtctagttttttctttttttcttttctttatttgccccgtactttatgctttagcattctagcccata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG