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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTGATGGACCTGGAGCAGTATTGGTCAATCTGTTGACAAGCCTAAGGCATTTGCCACCTGCAATGCATTCAGTGCTTCTTGTCATGGCTCTTAGTTGGgtaagtgcctcagtagttacatgtcaccaattttgtttccaatactgcatggcaatatcaaatttgaaattagcttgtttattgattattgatcattagtgtttctgtgtaatggttgctctgttgaggtcttttccttgatattatactcctgtatgcag

Basic information

species Vitis vinifera
transcript Vv01s0026g01960.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0026g01960.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT2G02860.2 (Arabidopsis thaliana), 5'ss of exon 9
CAGTGATGGACCTGGAGCAGTATTGGTCAATCTGTTGACAAGCCTAAGGCATTTGCCACCTGCAATGCATTCAGTGCTTCTTGTCATGGCTCTTAGTTGGgtaagtgcctcagtagttacatgtcaccaattttgtttccaatactgcatggcaatatcaaatttgaaattagcttgtttattgattattgatcattagtgtttctgtgtaatggttgctctgttgaggtcttttccttgatattatactcctgtatgcag
|  |||||| |||||| | || || || ||| || | || ||  |||||||||||||||| || ||||| ||||| ||| | |||||||||||||  ||||| ||||||  || |     |||  | || ||   || |  ||| | ||   || | |    |||    |||   | |||| ||||  || |   |   || ||||||   ||  |||     ||| |||||| | |||   |                  
CGTTGATGGCCCTGGATCTGTTTTAGTGAATTTGCTAACTAGTTTAAGGCATTTGCCACCGGCTATGCACTCAGTTCTTATCGTCATGGCTCTTACATGGgtgagtgccaaagaaaaattatg--atcagtt--attac--atatttca---cactgtttcttttc---ttaaactctttaatgatctttaaaattatttgcttctgttatatttttg----attgtggtcttgttctttgcag-----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161719459|gb|FC067681.1|FC067681
EST:     ATTTGCCACCTGCAATGCATTCAGTGCTTCTTGTCATGGCTCTTAGTTGG                         CTGTCCTGGTTTCCCTTCTTTCTTTTTGATACGGATTGGATGGGTAGAGAA
genomic: ATTTGCCACCTGCAATGCATTCAGTGCTTCTTGTCATGGCTCTTAGTTGGgtaagtgcct ... ctgtatgcagCTGTCCTGGTTTCCCTTCTTTCTTTTTGATACGGATTGGATGGGTAGAGAA