Sequence
atgc intronic sequence ATGC exonic sequenceGGTTCCTGTTTTTGAGCAGCGTGTTGATAACATAGTTGGTGTTGCATATGCAATGGATCTGCTGGATTATCTTCAGAAGgttagctagcattgcatttatcttttttgataaataagcaatagaggcaaagagggtgacaaattttacttctgtttcttatgctaaattatcgttgtgttatttcttctaattatacacaactatctgatagtttgcagaattatgatctgtttgattttgaag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0090g01820.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA02G46780.1 (Glycine max), 5'ss of exon 8
GGTTCCTGTTTTTGAGCAGCGTGTTGATAACATAGTTGGTGTTGCATATGCAATGGATCTGCTGGATTATCTTCAGAAGgttagctagcattgcatttatcttttttgataaataagcaatagaggcaaagagggtgacaaattttacttctgtttcttatgctaaattatcgttgtgttatttcttctaattatacacaactatctgatagtttgcagaattatgatctgtttgattttgaag
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GGTACCTGTTTTTGAGCAACGTGTTGATAATATAATGGGTATAGCATATGCAATGGATCTGCTGGATTATGTTCAAAAGgttggc------------------------------------------------------agattttactcatcatgtttat--tgagttacaagtgctttacttatt--aattatatcccccaatctcatagtttgcagaactataatctgtttgattttgaag
upper sequence: Vv19s0090g01820.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA02G46780.1 (Glycine max), 5'ss of exon 8
GGTTCCTGTTTTTGAGCAGCGTGTTGATAACATAGTTGGTGTTGCATATGCAATGGATCTGCTGGATTATCTTCAGAAGgttagctagcattgcatttatcttttttgataaataagcaatagaggcaaagagggtgacaaattttacttctgtttcttatgctaaattatcgttgtgttatttcttctaattatacacaactatctgatagtttgcagaattatgatctgtttgattttgaag
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GGTACCTGTTTTTGAGCAACGTGTTGATAATATAATGGGTATAGCATATGCAATGGATCTGCTGGATTATGTTCAAAAGgttggc------------------------------------------------------agattttactcatcatgtttat--tgagttacaagtgctttacttatt--aattatatcccccaatctcatagtttgcagaactataatctgtttgattttgaag
upper sequence: Vv19s0090g01820.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA14G01920.1 (Glycine max), 5'ss of exon 8
GGTTCCTGTTTTTGAGCAGCGTGTTGATAACATAGTTGGTGTTGCATATGCAATGGATCTGCTGGATTATCTTCAGAAGgttagctagcattgcatttatcttttttgataaataagcaatagaggcaaagagggtgacaaattttacttctgtttcttatgctaaattatcgttgtgttatttcttctaattatacacaactatctgatagtttgcagaattatgatctgtttgattttgaag
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AGTACCTGTTTTTGAGCAACGTGTTGATAATATAATGGGTATAGCTTATGCAATGGATCTGCTGGATTATGTTCAAAAGgttagg------------------------------------------------------agattttactcatcatgtttat--tgagttactagtgctttacttgtc--aattatatcccccaatctcatagtctgcagaattataatctgtttgattttgaag
upper sequence: Vv19s0090g01820.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA14G01920.1 (Glycine max), 5'ss of exon 8
GGTTCCTGTTTTTGAGCAGCGTGTTGATAACATAGTTGGTGTTGCATATGCAATGGATCTGCTGGATTATCTTCAGAAGgttagctagcattgcatttatcttttttgataaataagcaatagaggcaaagagggtgacaaattttacttctgtttcttatgctaaattatcgttgtgttatttcttctaattatacacaactatctgatagtttgcagaattatgatctgtttgattttgaag
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AGTACCTGTTTTTGAGCAACGTGTTGATAATATAATGGGTATAGCTTATGCAATGGATCTGCTGGATTATGTTCAAAAGgttagg------------------------------------------------------agattttactcatcatgtttat--tgagttactagtgctttacttgtc--aattatatcccccaatctcatagtctgcagaattataatctgtttgattttgaag
upper sequence: Vv19s0090g01820.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT1G55930.1 (Arabidopsis thaliana), 5'ss of exon 8
GGTTCCTGTTTTTGAGCAGCGTGTTGATAACATAGTTGGTGTTGCATATGCAATGGATCTGCTGGATTATCTTCAGAAGgttagctagcattgcatttatcttttttgataaataagcaatagaggcaaagagggtgacaaattttacttctgtttcttatgctaaattatcgttgtgttatttcttctaattatacacaactatctgatagtttgcagaattatgatctgtttgattttgaag
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GGTTCCTGTTTTTGAGCAGAGGATTGATAACATAGTTGGTATTGCATATGCTATGGATCTCCTAGATTATGTTCCAAAGgtctggctgctt--cattttctgtttcttgtgtttgttttcttttcactgataaggacacca----tagttgtgcacttt-tgtggaatgaat-ttatatattttcttctgttt-tgcag---------------------------------------------
upper sequence: Vv19s0090g01820.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT3G13070.1 (Arabidopsis thaliana), 5'ss of exon 8
GGTTCCTGTTTTTGAGCAGCGTGTTGATAACATAGTTGGTGTTGCATATGCAATGGATCTGCTGGATTATCTTCAGAAGgttagctagcattgcatttatcttttttgataaataagcaatagaggcaaagagggtgacaaattttacttctgtttcttatgctaaattatcgttgtgttatttcttctaattatacacaactatctgatagtttgcagaattatgatctgtttgattttgaag
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GGTGCCTGTTTTTGAGCAGCGTATTGATAATATAGTGGGAATTGCATATGCTATGGATCTTCTAGATTATGTTCAGAAGgtttgacagtttcat-ttcctatttcttgct----------------tccagtttttgttagggtttctttctgttaattgtgttgtagaat-gaaatat-actgtgtttgattttgaag---------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71871934|gb|DT020989.1|DT020989EST: ACATAGTTGGTGTTGCATATGCAATGGATCTGCTGGATTATCTTCAGAAG GGGGAGATTCTAGAAAGTTCTATTGTGGGAGATATGGCTCATAAACCTGCA
genomic: ACATAGTTGGTGTTGCATATGCAATGGATCTGCTGGATTATCTTCAGAAGgttagctagc ... gattttgaagGGGGAGATTCTAGAAAGTTCTATTGTGGGAGATATGGCTCATAAACCTGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTTCCTGTTTTTGAGCAGCGTGTTGATAACATAGTTGGTGTTGCATATGCAATGGATCTGCTGGATTATCTTCAGAAGgttagctagcattgcatttatcttttttgataaataagcaatagaggcaaagagggtgacaaattttacttctgtttcttatgctaaattatcgttgtgttatttcttctaattatacacaactatctgatagtttgcagaattatgatctgtttgattttgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA