Sequence
atgc intronic sequence ATGC exonic sequenceTGAGAACCGTCGTGCAACATATAGCATATCCAATCAACCAATTGTTGGATCTGAGACAATATTTAATACCTTTGAGGCTGAAGCCAAACAACTGGTTGCTgtatgtagccaataaatttacatctccccttgaatgctctgcatttgtactcatcagtttctttttctgaatcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0090g00610.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA13G05000.1 (Glycine max), 5'ss of exon 9
TGAGAACCGTCGTGCAACATATAGCATATCCAATCAACCAATTGTTGGATCTGAGACAATATTTAATACCTTTGAGGCTGAAGCCAAACAACTGGTTGCTgtatgtagccaataaatttacatctccccttgaatgctctgcat--ttgtactcatcagtttctttttctgaatcag-------------------------
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CGAAAGTCGTCGTGCATCTTATAATATGTCCAATCAACCAATTGTTAGATCAGATTCAATATTTATGACCTTTGAGAGTAAAATGAAGCATCTGGTTACTgtatgtatcaaaatgactgaatctttttcttgtatagttggcttgcttttactca-cattgtcaaaacataaaacattagaatttgtaatttttggatacag
upper sequence: Vv19s0090g00610.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA08G43050.2 (Glycine max), 5'ss of exon 6
TGAGAACCGTCGTGCAACATATAGCATATCCAATCAACCAATTGTTGGATCTGAGACAATATTTAATACCTTTGAGGCTGAAGCCAAACAACTGGTTGCTgtatgtagccaataaatttacatctccccttgaatgctctgcat--ttgtactcatcagtttctttttctgaatcag-------------------------
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TGAAAGTCGTCGTGCATCTTATAATATGTCCAATCAACCAATTGTTAGATCAGATTCAATATTTATGACCTTTGAGAGTGAAATGAAGCATCTGGTTACTgtatgtattaaaaggactgaatttttttattgtatagttggcttgcttttactcat-attgtcaaaacattaaacattacaatttgtgatttttggatacag
upper sequence: Vv19s0090g00610.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA18G10850.1 (Glycine max), 5'ss of exon 8
TGAGAACCGTCGTGCAACATATAGCATATCCAATCAACCAATTGTTGGATCTGAGACAATATTTAATACCTTTGAGGCTGAAGCCAAACAACTGGTTGCTgtatgtagccaa-taaatttacatctccccttgaatgctctgcat--ttgtactcatcagtttctttttctgaatcag----------------------------
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CGAAAGTCGTCGTGCATCTTATAATATGTCCAATCAACCAATTGTTAGATCAGATTCAATATTTATGACCTTTGAGAGTAAAATGAAGCATCTGGTTACTgtatgtatcaaaataactgaattttttttcttgtatagttggcttggttttactca-cattgtcaaaacataataaaacattacaatttgtaatttttggatacag
upper sequence: Vv19s0090g00610.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA08G43050.1 (Glycine max), 5'ss of exon 8
TGAGAACCGTCGTGCAACATATAGCATATCCAATCAACCAATTGTTGGATCTGAGACAATATTTAATACCTTTGAGGCTGAAGCCAAACAACTGGTTGCTgtatgtagccaataaatttacatctccccttgaatgctctgcat--ttgtactcatcagtttctttttctgaatcag------------------------
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TGAAAGTCGTCGTGCATCTTATAATATGTCCAATCAACCAATTGTTAGATCAGATTCAATATTTATGACCTTTGAGAGTGAAATGAAGCATCTGGTTACTgtatgtattaaaaggactgaatttttttattgtatagttggcttgcttttactcat-attgtcaaaacattaaacattacaatttgtgatttttggatacaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161718911|gb|FC068629.1|FC068629EST: CTGAGACAATATTTAATACCTTTGAGGCTGAAGCCAAACAACTGGTTGCT GTTGGGCTTCATGCAGATCATTCT
genomic: CTGAGACAATATTTAATACCTTTGAGGCTGAAGCCAAACAACTGGTTGCTgtatgtagcc ... tctgaatcagGTTGGGCTTCATGCAGATCATTCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGAGAACCGTCGTGCAACATATAGCATATCCAATCAACCAATTGTTGGATCTGAGACAATATTTAATACCTTTGAGGCTGAAGCCAAACAACTGGTTGCTgtatgtagccaataaatttacatctccccttgaatgctctgcatttgtactcatcagtttctttttctgaatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC