1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGAAGCCATCAGAGTCATCTTCTCATGTTGACAAAGAATATAGTGAACCAGATGTGGTGGAGGAGTTATTTGAGGAAGGATCTGCTATGCTTGCCGAAAGgtttggaccatgcaaaataatccatttaccaaaaagcttcttttctccaggatcagaaaatatgctaccaccatgtgtttttttccattcttaattcttc...
species | Vitis vinifera |
transcript | Vv18s0001g10700.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GATGTGGTGGAGGAGTTATTTGAGGAAGGATCTGCTATGCTTGCCGAAAG GCTAGATGCGAAATACCCGATATGCAACGTGTTTAAGTTGTTCATGTGTGCEST: gi|110362650|gb|EC926197.1|EC926197
genomic: GATGTGGTGGAGGAGTTATTTGAGGAAGGATCTGCTATGCTTGCCGAAAGgtttggacca ... ttgattgcagGCTAGATGCGAAATACCCGATATGCAACGTGTTTAAGTTGTTCATGTGTGC
EST: GATGTGGTGGAGGAGTTATTTGAGGAAGGATCTGCTATGCTTGCCGAAAG GCTAGATGCGAAATACCCGATATGCAACGTGTTTAAGTTGTTCATGTGTGCEST: gi|110370571|gb|EC930039.1|EC930039
genomic: GATGTGGTGGAGGAGTTATTTGAGGAAGGATCTGCTATGCTTGCCGAAAGgtttggacca ... ttgattgcagGCTAGATGCGAAATACCCGATATGCAACGTGTTTAAGTTGTTCATGTGTGC
EST: GATGTGGTGGAGGAGTTATTTGAGGAAGGATCTGCTATGCTTGCCGAAAG GCTAGATGCGAAATACCCGATATGCAACGTGTTTAAGTTGTTCATGTGTGC
genomic: GATGTGGTGGAGGAGTTATTTGAGGAAGGATCTGCTATGCTTGCCGAAAGgtttggacca ... ttgattgcagGCTAGATGCGAAATACCCGATATGCAACGTGTTTAAGTTGTTCATGTGTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAGCCATCAGAGTCATCTTCTCATGTTGACAAAGAATATAGTGAACCAGATGTGGTGGAGGAGTTATTTGAGGAAGGATCTGCTATGCTTGCCGAAAGgtttggaccatgcaaaataatccatttaccaaaaagcttcttttctccaggatcagaaaatatgctaccaccatgtgtttttttccattcttaattcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaata