1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTTGATGAAGATTGCAATGACTACTTTGAGTTCAAAAATTCTTTCCCAGGACAAGGAACATTTTGCAAAACTGGCAGTAGATGCTGTTATGAGACTGAAGgtgagtaatgacatttcatttgcaagtagtttggaactggggtttcaagatgggcagtgaaatttgaccttaaaactacatatcaactgcaatgaaaata...
species | Vitis vinifera |
transcript | Vv18s0001g00480.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ACAAGGAACATTTTGCAAAACTGGCAGTAGATGCTGTTATGAGACTGAAG GGCAGCACAAACTTGGAGTCTATTCAAATTATTAAGAAGCCTGGAGGATCAEST: gi|352773730|gb|FQ472512.1|FQ472512
genomic: ACAAGGAACATTTTGCAAAACTGGCAGTAGATGCTGTTATGAGACTGAAGgtgagtaatg ... taattggcagGGCAGCACAAACTTGGAGTCTATTCAAATTATTAAGAAGCCTGGAGGATCA
EST: ACAAGGAACATTTTGCAAAACTGGCAGTAGATGCTGTTATGAGACTGAAG GGCAGCACAAACTTGGAGTCTATTCAAATTATTAAGAAGCCTGGAGGATCAEST: gi|352777695|gb|FQ466748.1|FQ466748
genomic: ACAAGGAACATTTTGCAAAACTGGCAGTAGATGCTGTTATGAGACTGAAGgtgagtaatg ... taattggcagGGCAGCACAAACTTGGAGTCTATTCAAATTATTAAGAAGCCTGGAGGATCA
EST: ACAAGGAACATTTTGCAAAACTGGCAGTAGATGCTGTTATGAGACTGAAG GGCAGCACAAACTTGGAGTCTATTCAAATTATTAAGAAGCCTGGAGGATCAEST: gi|352781730|gb|FQ469028.1|FQ469028
genomic: ACAAGGAACATTTTGCAAAACTGGCAGTAGATGCTGTTATGAGACTGAAGgtgagtaatg ... taattggcagGGCAGCACAAACTTGGAGTCTATTCAAATTATTAAGAAGCCTGGAGGATCA
EST: ACAAGGAACATTTTGCAAAACTGGCAGTAGATGCTGTTATGAGACTGAAG GGCAGCACAAACTTGGAGTCTATTCAAATTATTAAGAAGCCTGGAGGATCA
genomic: ACAAGGAACATTTTGCAAAACTGGCAGTAGATGCTGTTATGAGACTGAAGgtgagtaatg ... taattggcagGGCAGCACAAACTTGGAGTCTATTCAAATTATTAAGAAGCCTGGAGGATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGATGAAGATTGCAATGACTACTTTGAGTTCAAAAATTCTTTCCCAGGACAAGGAACATTTTGCAAAACTGGCAGTAGATGCTGTTATGAGACTGAAGgtgagtaatgacatttcatttgcaagtagtttggaactggggtttcaagatgggcagtgaaatttgaccttaaaactacatatcaactgcaatgaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agtgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaactac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgaaaa