Sequence
atgc intronic sequence ATGC exonic sequenceATTGACCTGAGGAGGGCCAATAACACTGAAATTATGCTCACAAAAGTTAAGATGCCACTTTCTGATATGATGgtaagctggatatagtcaaagttcttatattcattattttatttttttaaatttctttctgaaatagatgcaaaagattgtcatgattcagtggcatttt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g06640.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G414002_T02 (Zea mays), 5'ss of exon 6
ATTGACCTGAGGAGGGCCAATAACACTGAAATTATGCTCACAAAAGTTAAGATGCCACTTTCTGATATGATGgtaagc-tggatatagtcaaagttcttatat-tcattattttatttttttaaatttctttctgaaatagatgcaaaagattgtcatgattcagtggcatttt
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ATTGAGTTGAGGAGGGCAAATAACACAGAGATCATGCTGACAAAAGTTAAAATGCCACTCTCGGATTTGGTGgtaagaatgaggacagtatacaagataaggtctcactattttataatttctgacatattgcc-----atttgccaatgattgatttc-tccag---------
upper sequence: Vv17s0000g06640.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA06G21190.1 (Glycine max), 5'ss of exon 9
ATTGACCTGAGGAGGGCCAATAACACTGAAATTATGCTCACAAAAGTTAAGATGCCACTTTCTGATATGATGgtaagctggatatagtcaaagttcttatattcattattttatttttttaaatttctttctgaaa--tagatgcaaaagattgtcatgattcagtggcatttt
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ATTGACCTAAGGAGGGCCAATAATACTGAAATTATGCTCACAAAGGTTAAGATGCCACTTCCTGATATTATGgtaagttg-atactttgaaatttctta-attcatgtcagcaattttaaatgtataatcatgcaagctaggatcttacattaaatccgattataatgaacaat
upper sequence: Vv17s0000g06640.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA04G32990.1 (Glycine max), 5'ss of exon 10
ATTGACCTGAGGAGGGCCAATAACACTGAAATTATGCTCACAAAAGTTAAGATGCCACTTTCTGATATGATGgtaagctggatatagtcaaagttctt--atattcattattttatttttttaa--atttctttctgaaatagatgcaaaagattgtcatgattcagtggcatttt
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ATTGACCTTAGGAGGGCCAATAATACTGAAATTATGCTCACGAAGGTTAAGATGCCACTTCCTGATATGATGgtaagttg-atactttgaaatttctttcatgtgagcaatttttaatgtataatcatgcgagctaggattttacattaaagcatattatagtg-aacaacagt--
upper sequence: Vv17s0000g06640.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA05G00820.1 (Glycine max), 5'ss of exon 7
ATTGACCTGAGGAGGGCCAATAACACTGAAATTATGCTCACAAAAGTTAAGATGCCACTTTCTGATATGATGgtaagctg----gatatagtcaaagttcttatattcatt--attttatttttttaaatttc---tttctga-aatagatgcaaaagattgt--catgat-tcagtggcatttt----------------------------------------------------------------------------------
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GTTGATCTAAGGAGGGCTAATAATACTGAAATTATGCTCACCAAGGTTAAGATGCCACTTCCTGATATGATGgtaggctgacacgttgatgtgggcatttttaaaatcatgcaagagtagttatttaagttaaaggctgctgatagtagataaacaatcttttggcaccatatctgctacaaactttttctaacttctgaaatctcaacatggaactatcaatggtaagtattatctttcctaacacgttgaaatggatattctcag
upper sequence: Vv17s0000g06640.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA17G11100.1 (Glycine max), 5'ss of exon 9
ATTGACCTGAGGAGGGCCAATAACACTGAAATTATGCTCACAAAAGTTAAGATGCCACTTTCTGATATGATGgtaagctgga----tatagtcaaagttcttata--ttcattattttatttttttaaatt---tctttctga-aatagatgca-----aaagattgtcatgat--tcagtggcatttt-----------------
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GTTGATCTAAGGAGGGCTAATAATACTGAAATTATGCTCACCAAGGTTAAGATGCCACTTCCCGATATGATGgtaggctgatactttgatgtgggaatctttataatcttgcaagagtagttatttaagttaaaggctgctgatagtagataaacaatcaatggtaaatattatctttcctaacactttgaaatggatattctcag
upper sequence: Vv17s0000g06640.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT5G07740.1 (Arabidopsis thaliana), 5'ss of exon 6
ATTGACCTGAGGAGGGCCAATAACACTGAAATTATGCTCACAAAAGTTAAGATGCCACTTTCTGATATGATGgtaagctggatatagtcaaagttcttatattcattattttatttttttaaatttctttctgaaatagatgcaaaagattgtcatgattcagtggcatttt----
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ATTGACCTTAGGAGAGCCAATAACACGGAAATTATGCTTACTAAAGTAAAGATGCCGCTACCTGATATGATGgtaagttcca-gtacctactttacctg-agtgaaagtcatgactggtta---ccctttcatagtttgatgataattattcaaatttttctttg-catcgtccag
upper sequence: Vv17s0000g06640.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT5G07650.1 (Arabidopsis thaliana), 5'ss of exon 17
ATTGACCTGAGGAGGGCCAATAACACTGAAATTATGCTCACAAAAGTTAAGATGCCACTTTCTGATATGATGgtaagctggatatagtcaaagttcttatattcattattttatttttttaaatttctttctgaaatagatgcaaaagattgt-catgattcagtggcatttt
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ATTGACCTTAGGAGAGCCAATGACACGGAAATTATGCTTACTAAAGTAAACATTCCGCTGGCTGATATGATGgtaattaagctcc---taaa---cctac-tttactggttgatgttttatagttttaatgataatttatcacattattctttgcaccatccag---------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37184855|gb|CF604209.1|CF604209EST: ACACTGAAATTATGCTCACAAAAGTTAAGATGCCACTTTCTGATATGATG GCTGCAGTTCTAGCAATGGATGAGTCAATTTTAGATGTTGATCAAGTGGAA
genomic: ACACTGAAATTATGCTCACAAAAGTTAAGATGCCACTTTCTGATATGATGgtaagctgga ... atattctcagGCTGCAGTTCTAGCAATGGATGAGTCAATTTTAGATGTTGATCAAGTGGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTGACCTGAGGAGGGCCAATAACACTGAAATTATGCTCACAAAAGTTAAGATGCCACTTTCTGATATGATGgtaagctggatatagtcaaagttcttatattcattattttatttttttaaatttctttctgaaatagatgcaaaagattgtcatgattcagtggcatttt
- - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaaaag