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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTACTCTGGCACTTCTTCTTGGTAGTGATTACTCTCAGGGAGTTCATGGGTTTGGGCCAgtaagttctgaaaagtgtcatttcctggttggataacttatctttcctcttaatctcaagagctgaatggaagcttatgttgttgcaattgtttctttggccacag

Basic information

species Vitis vinifera
transcript Vv16s0100g01300.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0100g01300.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os08g01130.1 (Oryza sativa), 5'ss of exon 8
ATTACTCTGGCACTTCTTCTTGGTAGTGATTACTCTCAGGGAGTTCATGGGTTTGGGCCAgtaagttctgaaaag--tgtcatttcc----tggttggataacttatctttcctctta---atctcaagagctgaatggaagctt----atgttgttgcaattgtttctttggccacag-------------------------------
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ATATCACTTGCAGTGCTCCTTGGTAGTGATTATTCTAATGGAGTTAATGGGTTTGGCCCAgtaagtacaaaaaaaactgtcattttcattgtcttagtataacatgcatctgttcttatatgtttctatatgaaatctgacactcgacgacaagatgggaatcatggagcttatcattatatttgtaatggtgctcttttaatgttccag