1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CATTCCAGTGTTGGAGCAAAACTATTTTCCACAGCTGACAGTCCTGTCAGTAGCAAACCTCCTGGGGGAGACTATATGGCGTGTTCATGATGACTGCTCAgtgagtagtatttttcagtaaactggtttaatgagagaatcaacaaaaaagttggttcatttttgttacttgcatggggttttggtatgttgaagttgtc...
species | Vitis vinifera |
transcript | Vv15s0021g00460.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TAGCAAACCTCCTGGGGGAGACTATATGGCGTGTTCATGATGACTGCTCA AGTGGCTTTGAACCCTATTCCAGCTTTGGCATTGATTAATCAATTCTCGEST: gi|71874060|gb|DT023115.1|DT023115
genomic: TAGCAAACCTCCTGGGGGAGACTATATGGCGTGTTCATGATGACTGCTCAgtgagtagta ... tgattgtcagAGTGGCTTTGAACCCTATTCCAGCTTGGGCATTGATTAATCAATTCTCG
EST: TAGCAAACCTCCTGGGGGAGACTATATGGCGTGTTCATGATGACTGCTCA AGTGGCTTTGAACCCTEST: gi|110396249|gb|EC961930.1|EC961930
genomic: TAGCAAACCTCCTGGGGGAGACTATATGGCGTGTTCATGATGACTGCTCAgtgagtagta ... tgattgtcagAGTGGCTTTGAACCCT
EST: TAGCAAACCTCCTGGGGGAGACTATATGGCGTGTTCATGATGACTGCTCA AGTGGCTTTGAACCCTATTCCAGCTTGGGCATTGATTAATCAATTCTCGTC
genomic: TAGCAAACCTCCTGGGGGAGACTATATGGCGTGTTCATGATGACTGCTCAgtgagtagta ... tgattgtcagAGTGGCTTTGAACCCTATTCCAGCTTGGGCATTGATTAATCAATTCTCGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATTCCAGTGTTGGAGCAAAACTATTTTCCACAGCTGACAGTCCTGTCAGTAGCAAACCTCCTGGGGGAGACTATATGGCGTGTTCATGATGACTGCTCAgtgagtagtatttttcagtaaactggtttaatgagagaatcaacaaaaaagttggttcatttttgttacttgcatggggttttggtatgttgaagttgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagtaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaag