Sequence
atgc intronic sequence ATGC exonic sequenceTTGTGAGCTCTTAGGAGTGGATCCTGCTGATGTGGATATCCTGATGGGAACATTTACTAAATCATTTGGATCATGTGGTGGCTATATTGCAGGATCAAAGgtttgtttttgcaactgccctcagttgactgtgatatatatatatatatatatatatatatgtgtgtgtgggtgtgtgtggaaaaaggcaatattctaag...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0068g01300.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os01g70380.1 (Oryza sativa), 5'ss of exon 8
TTGTGAGCTCTTAGGAGTGGATCCTGCTGATGTGGATATCCTGATGGGAACATTTACTAAATCATTTGGATCATGTGGTGGCTATATTGCAGGATCAAAGgtttgtttttgcaactgccctcagttgactgtgatatatatatatatatatatatatatatgtgtgtgtgggtgtgtgtggaaaaaggcaatattctaag
||||||||| |||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||| || || || ||||||| |||||| || || | | | | || | ||| | | | | ||| || | || | | ||||| | |
TTGTGAGCTACTAGGTGTGGATCCAGCTGATGTCGATATTATGATGGGAACATTTACTAAATCATTTGGATCATGCGGAGGTTACATTGCAGCATCAAAAgtatgaa---gaagattcacttgctatacttggctgagcactgtagttgataaatctgaccatggattatgctgtgtttatcag----------------
upper sequence: Vv14s0068g01300.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os01g70370.1 (Oryza sativa), 5'ss of exon 8
TTGTGAGCTCTTAGGAGTGGATCCTGCTGATGTGGATATCCTGATGGGAACATTTACTAAATCATTTGGATCATGTGGTGGCTATATTGCAGGATCAAAGgtttgtt-tttgcaactgccctcagttgactgtgatatatatatatatatatat-atatat-atgtgtgtgtgggtgtgtgtggaaaaaggcaatattctaag
|||||| | | |||||||| || || ||||| ||||| ||||||||||||||||||||||||||||||| ||||| || || ||||||| |||||| || || | | | || | || || | | | | || || | | || | | || | | | ||| | |
TTGTGAATTACTTGGAGTGGACCCAGCGGATGTTGATATTATGATGGGAACATTTACTAAATCATTTGGATCTTGTGGAGGTTACATTGCAGCATCAAAAgtatgaagcatattaacgtact-atttagatgaacaactttagtctgtagattttaaatctgacccatggattactctatgtttatcag--------------
upper sequence: Vv14s0068g01300.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os11g31640.1 (Oryza sativa), 5'ss of exon 8
TTGTGAGCTCTTAGGAGTGGATCCTGCTGATGTGGATATCCTGATGGGAACATTTACTAAATCATTTGGATCATGTGGTGGCTATATTGCAGGATCAAAGgtttgtttttgca--actgccctcagttgactgtgatatatatatatatatatatatatatatgtgtgtgtgggtgtgtgtggaaaaaggcaatattctaag
|||||||||| | || || ||||| ||||||||||| || ||||||| || || ||||| |||||||||||||||||||| |||||||||| ||| ||||| | || | ||| | ||||||| || | | || || || | | | || |
TTGTGAGCTCCTTGGGGTTGATCCAGCTGATGTGGACATAATGATGGGCACTTTCACTAAGTCATTTGGATCATGTGGTGGATATATTGCAGCATCGAAGgtacatcttcagagcacttctttcagttgcttgaattgaaaatttactgattcacct-tgcttgaactctcag-----------------------------
upper sequence: Vv14s0068g01300.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os01g70360.1 (Oryza sativa), 5'ss of exon 8
TTGTGAGCTCTTAGGAGTGGATCCTGCTGATGTGGATATCCTGATGGGAACATTTACTAAATCATTTGGATCATGTGGTGGCTATATTGCAGGATCAAAGgtttgtttttgc-aactgccctcagttgactgtgatatatatatatatatatatatatatatgtgtgtgtgggtgtgtgtggaaaaaggcaatattc-taag
|||||||| ||||||||||||| |||||||| || ||| ||||||| ||| | | || ||||||||||| |||| || || ||||||| |||||| || || || || ||| || | || | | | | | | | | | || | | || | || || ||
GTGTGAGCTACTAGGAGTGGATCCGGCTGATGTTGACATCATGATGGGCACACTCTCAAAGTCATTTGGATCGAGTGGAGGTTACATTGCAGCATCAAAAgtatgaattaattaagcagattcacttaccagttct-tgtctgagaagacaaaagagttgataataaaactgatccttggattattttttcatgtttaccag
upper sequence: Vv14s0068g01300.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G010202_T01 (Zea mays), 5'ss of exon 8
TTGTGAGCTCTTAGGAGTGGATCCTGCTGATGTGGATATCCTGATGGGAACATTTACTAAATCATTTGGATCATGTGGTGGCTATATTGCAGGATCAAAGgtttgtttttgcaactgccctcagttgactgtga-tatatatatatatatatatatatatatgtgtgtgtgggtgtgtgtggaaaaaggcaatattctaag
||||||||| | ||||||||||| |||||||| || || ||||||| ||||| || |||||||||||||||||||| || || ||||||| |||||| || | | | | | | || || ||| | ||| || | | | | | || || ||| | |
TTGTGAGCTGCTCGGAGTGGATCCAGCTGATGTTGACATTATGATGGGTACATTCACAAAATCATTTGGATCATGTGGAGGTTACATTGCAGCATCAAATgtaagcgtgtatagtcac--ttagctgttgttgactgaatacattttgaagttgacaaatctgacccaccaaatgttcattttttag--------------
upper sequence: Vv14s0068g01300.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G152888_T01 (Zea mays), 5'ss of exon 8
TTGTGAGCTCTTAGGAGTGGATCCTGCTGATGTGGATATCCTGATGGGAACATTTACTAAATCATTTGGATCATGTGGTGGCTATATTGCAGGATCAAAGgtt--tgtttttgcaactgccctcagttgactgtgatatatatatatatatatatatatatatgtgtgtgtgggtgtgtgtggaaaaaggcaatattctaag
|||||||||| | || || || || |||||||| ||||| ||||||| || ||||| || || ||||||||||||||||| |||||||| | ||||||||| | | || || || | | | ||||| | | || | || | | || || | | | | | |
TTGTGAGCTCCTTGGGGTTGACCCAGCTGATGTAGATATAATGATGGGTACTTTTACCAAGTCTTTTGGATCATGTGGTGGATATATTGCCGCATCAAAGgtgcatactactgaaagtgactgtattacactgtagcacttgtaagattgcat-tgaagatttgctgattcttttcactataaatttcag------------
upper sequence: Vv14s0068g01300.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G142030_T01 (Zea mays), 5'ss of exon 8
TTGTGAGCTCTTAGGAGTGGATCCTGCTGATGTGGATATCCTGATGGGAACATTTACTAAATCATTTGGATCATGTGGTGGCTATATTGCAGGATCAAAGgtttgtttttgcaactgccctcagttgactgtgatatatatatatatatatatatatatatgtgtgtgtgggtgtgtgtggaaaaaggcaatattctaag
|||||| ||| | || || || || |||||||| ||||| ||||||| || || || || || ||||||||||||||||| |||||||| | ||||||||| | | | || ||| | || | || | | || || | | || || | | | | | || |||
TTGTGAACTCCTTGGGGTTGACCCAGCTGATGTAGATATAATGATGGGTACTTTCACCAAGTCTTTTGGATCATGTGGTGGATATATTGCCGCATCAAAGgtacatactactgaaagcgatcatattacaac--tgtagcactttgtaagaccgagtagaagattgaccggttccttttactata---taactttcag--
upper sequence: Vv14s0068g01300.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G067257_T01 (Zea mays), 5'ss of exon 10
-----------------------------------------------------TTGTGAGCTCTTAGGAGTGGATCCTGCTGATGTGGATATCCTGATGGGAACATTTACTAAATCATTTGGATCATGTGGTGGCTATATTGCAGGATCAAAGgtttgtttt--tgcaactgccctcagttgactgtgatatatatatatatatatatatatatatgtgtgtgtgggtgtgtgtggaaaaaggcaatattctaag
|||||||||| | || || || | |||||||| || || ||||||| || ||||| || || ||||||||||||||||| |||||||| | ||||||||| | | || || || | | | ||||| | | ||
TATCTGGATGAGGCCCATAGCATTGGTGCTGTTGGGCAGTCTGGCCGCGGTGTTTGTGAGCTCCTTGGGGTTGACCTAGCTGATGTAGACATAATGATGGgtacttttaccaagtcttttggatcatgtggtggatatattgctgcatcaaaggtacatactactgaaagtgactgtattacactgtagcacttg-gtaag------------------------------------------------------
upper sequence: Vv14s0068g01300.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G357734_T03 (Zea mays), 5'ss of exon 14
-----------------------------------------------------TTGTGAGCTCTTAGGAGTGGATCCTGCTGATGTGGATATCCTGATGGGAACATTTACTAAATCATTTGGATCATGTGGTGGCTATATTGCAGGATCAAAGgtttgtttt--tgcaactgccctcagttgactgtgatatatatatatatatatatatatatatgtgtgtgtgggtgtgtgtggaaaaaggcaatattctaag
|||||||||| | || || || | |||||||| || || ||||||| || ||||| || || ||||||||||||||||| |||||||| | ||||||||| | | || || || | | | ||||| | | ||
TATCTGGATGAGGCCCATAGCATTGGTGCTGTTGGGCAGTCTGGCCGCGGTGTTTGTGAGCTCCTTGGGGTTGACCTAGCTGATGTAGACATAATGATGGgtacttttaccaagtcttttggatcatgtggtggatatattgccgcatcaaaggtacatactactgaaagtgactgtattacactgtagcacttg-gtaag------------------------------------------------------
upper sequence: Vv14s0068g01300.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G055854_T01 (Zea mays), 5'ss of exon 6
--------------------------------------------------------------TTGTGAGCTCTTAGGAGTGGATCCTGCTGATGTGGATATCCTGATGGGAACATTTACTAAATCATTTGGATCATGTGGTGGCTATATTGCAGGATCAAAGgtt--tgtttttgcaactgccctcagttgactgtgatatatatatatatatatatatatatatgtgtgtgtgggtgtgtgtggaaaaaggcaatattctaag
|||||||||| | || || || | |||||||| ||||| ||||||| || ||||| || || ||||||||||||||||| ||||||| | ||||| || | | || || || | | | ||| | | | | || | || | | || || || | | | | || || ||
GCCTACACATATCTGGATGAGGCCCATAGCATTGGTGCTGTTGGGCAGTCTAGCCGCGGTGTTTGTGAGCTCCTTGGGGTTGACCGAGCTGATgtagatataatgatgggtacttttaccaagtcttttggatcatgtggtggatatattgtcgcgtcaaatgtgcatactactgaaagtgactgtattacactatagcacttggtaagat-tgcat-tgaagatttgc---tgattcttttcactataac------ttttag-
upper sequence: Vv14s0068g01300.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA02G07250.1 (Glycine max), 5'ss of exon 8
TTGTGAGCTCTTAGGAGTGGATCCTGCTGATGTGGATATCCTGATGGGAACATTTACTAAATCATTTGGATCATGTGGTGGCTATATTGCAGGATCAAAGgtttgtttttgcaactgccctcagttgactgtgatatatatatatatatatatat-atatatgtgtgtgtgggtgtgtgtggaaaaaggcaatattctaag
|||||||||||| || |||||| |||||||||| || || ||||||||||||| || ||||| |||||||| ||||| || || ||||||||||| ||||| ||| | || | | | | | | | || | ||| | | | ||| | || |||| | | | | | |
TTGTGAGCTCTTGGGTGTGGATACTGCTGATGTTGACATTATGATGGGAACATTCACCAAATCTTTTGGATCCTGTGGAGGTTACATTGCAGGATCGAAGgtacttttgttaaattttagactccaaatt-tagtgtttaactgaggcagtatgttgctaaaatctgtcagagtaggtgttcagattttctttcctattga
upper sequence: Vv14s0068g01300.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA16G26210.1 (Glycine max), 5'ss of exon 8
TTGTGAGCTCTTAGGAGTGGATCCTGCTGATGTGGATATCCTGATGGGAACATTTACTAAATCATTTGGATCATGTGGTGGCTATATTGCAGGATCAAAGgtttgtttttgcaactgccctcagttgactgtgatatatatat-atatatatatatatatatgtgtgtgtgggtgtgtgtggaaaaaggcaatattctaag
|||||||||||| || |||||| |||||||||| || || ||||||||||||| || ||||| |||||||| ||||| || || ||||| ||||| ||||| ||| | ||| || | | | | | | || | | | | | | || ||| | || |||| | | | | || |
TTGTGAGCTCTTGGGTGTGGATACTGCTGATGTTGACATTATGATGGGAACATTCACCAAATCTTTTGGATCCTGTGGAGGTTACATTGCGGGATCTAAGgtacttttgt-caaatgttagaatccaaatttagtgtttaactgaggcagtaagttgctaaagtttgtcagagtaggtgttcagattttctttcttattga
upper sequence: Vv14s0068g01300.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT3G48780.1 (Arabidopsis thaliana), 5'ss of exon 8
TTGTGAGCTCTTAGGAGTGGATCCTGCTGATGTGGATATCCTGATGGGAACATTTACTAAATCATTTGGATCATGTGGTGGCTATATTGCAGGATCAAAGgtttgt--ttttgcaactgccctcagttgactgtgatatatatatatatatatatatatatatgtgtgtgtgggtgtgtgtggaaaaaggcaatattctaag----
|||||| ||| | ||||| || || |||||||||| || |||||||||| || || ||||| ||||| || ||||||||||||||||| |||||||||||| | |||| | | | || |||| || | | | | | || | | ||| | | ||| | | || | | ||| |
TTGTGAACTCCTTGGAGTTGACACTTCTGATGTGGACATAATGATGGGAACTTTCACGAAATCTTTTGGGTCTTGTGGTGGCTATATTGCGGGATCAAAGgttggcaattttatacttcttttgcatttactg--atcttt-tgtttgcattccttggtttatttaattttgg---taaatcagaatttgaacctttcagaaaaac
upper sequence: Vv14s0068g01300.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT5G23670.2 (Arabidopsis thaliana), 5'ss of exon 8
TTGTGAGCTCTTAGGAGTGGATCCTGCTGATGTGGATATCCTGATGGGAACATTTACTAAATCATTTGGATCATGTGGTGGCTATATTGCAGGATCAAAGgtttgt---ttttgcaactgccctcagttgactgtgatatatatatatatatatatatatatatgtgtgtgtgggtgtgtgtggaaaaaggcaatattctaag
|||||| ||| | ||||| || | ||||||||||| | |||||||||| || || ||||| ||||| || ||||||||||||||||| ||||| |||||| | | | || || | | || | | | || | | | | | | || | || | || || | || ||
TTGTGAACTCCTGGGAGTTGACACAGCTGATGTGGACGTAATGATGGGAACCTTCACAAAATCTTTTGGGTCTTGTGGTGGCTATATTGCTGGATCTAAGgttagaaaatgctacatttgtttttatttactgatcttgcaaatctcc-tgcagtcttgttttggtaaat-caagtttctgaccttttagttta-gctcaaaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|329112275|gb|JG391743.1|JG391743EST: AATC-TTTGGATCATGTGGTGGCTATATTGCAGGATCAAAG GAGCTCATTCAATACTTGAAACACACTTCCCCTGCTCATCTTTATGCAACT
genomic: AATCATTTGGATCATGTGGTGGCTATATTGCAGGATCAAAGgtttgttttt ... gaatcttcagGAGCTCATTCAATACTTGAAACACACTTCCCCTGCTCATCTTTATGCAACT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGTGAGCTCTTAGGAGTGGATCCTGCTGATGTGGATATCCTGATGGGAACATTTACTAAATCATTTGGATCATGTGGTGGCTATATTGCAGGATCAAAGgtttgtttttgcaactgccctcagttgactgtgatatatatatatatatatatatatatatgtgtgtgtgggtgtgtgtggaaaaaggcaatattctaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaaa