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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGTGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACCTCGgtaatcctttttcctcgatttctcttaggcaaatacatgattttaatggattggagtaataggaaattatgtcatggcattagctgtcaaactgaccttgttcttttctcaatatttttctccttttcag

Basic information

species Vitis vinifera
transcript Vv14s0060g00230.t01
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32271244|gb|CD720403.1|CD720403
EST:     TGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACCTCG                         TGCTTCTTCCCACAGAACGTGATATCCAATATC
genomic: TGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACCTCGgtaatccttt ... tccttttcagTGCTTCTTCCCACAGAACGTGATATCCAATATC
EST: gi|110415561|gb|EC981480.1|EC981480
EST:     TGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACCTCG                         TGCTTCTTCCCACAGAACGTGATATCCAATATCAAAACCCCGCTATTTCTT
genomic: TGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACCTCGgtaatccttt ... tccttttcagTGCTTCTTCCCACAGAACGTGATATCCAATATCAAAACCCCGCTATTTCTT
EST: gi|110363756|gb|EC927367.1|EC927367
EST:     TGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACCTCG                         TGCTTCTTCCCACAGAACGTGATATCCAATATCAAAACCCCGCTATTTCTT
genomic: TGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACCTCGgtaatccttt ... tccttttcagTGCTTCTTCCCACAGAACGTGATATCCAATATCAAAACCCCGCTATTTCTT
EST: gi|110373337|gb|EC937563.1|EC937563
EST:     TGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACCTCG                         TGCTTCTTCCCACAGAACGTGATATCCAATATC
genomic: TGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACCTCGgtaatccttt ... tccttttcagTGCTTCTTCCCACAGAACGTGATATCCAATATC
EST: gi|18458238|gb|BM436516.1|BM436516
EST:     TGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACCTCG                         TGCTTCTTCCCACAGAACGTGATATCCAATATCAAAACCCCGCTATTTCTT
genomic: TGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACCTCGgtaatccttt ... tccttttcagTGCTTCTTCCCACAGAACGTGATATCCAATATCAAAACCCCGCTATTTCTT
EST: gi|110363559|gb|EC927156.1|EC927156
EST:     TGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACCTCG                         TGCTTCTTCCCACAGAACGTGATATCCAATATCAAAACCCCGCTATTTCTT
genomic: TGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACCTCGgtaatccttt ... tccttttcagTGCTTCTTCCCACAGAACGTGATATCCAATATCAAAACCCCGCTATTTCTT
EST: gi|110373299|gb|EC937521.1|EC937521
EST:     TTTGTTTGAATCGTCTTGATCCAACCTCG                         TGCTTCTTCCCACAGAACGTGATATCCAATATCAAAACCCCGCTATTTCTT
genomic: TTTGTTTGAATCGTCTTGATCCAACCTCGgtaatccttt ... tccttttcagTGCTTCTTCCCACAGAACGTGATATCCAATATCAAAACCCCGCTATTTCTT
EST: gi|30327012|gb|CD010274.1|CD010274
EST:     TGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACCTCG                         TGCTTCTTCCCACAGAACGTGATA
genomic: TGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACCTCGgtaatccttt ... tccttttcagTGCTTCTTCCCACAGAACGTGATA
EST: gi|110397107|gb|EC962828.1|EC962828
EST:     TGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACCTCG                         TGCTTCTTCCCACAGAACGTGATATCCAATATCAAAACCCCGCTATTTCTT
genomic: TGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACCTCGgtaatccttt ... tccttttcagTGCTTCTTCCCACAGAACGTGATATCCAATATCAAAACCCCGCTATTTCTT
EST: gi|110422538|gb|EC988864.1|EC988864
EST:     TGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACCTCG                         TGCTTCTTCCCACAGAACGTGATATCCAATATCAAAACCCCGCTATTTCTT
genomic: TGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACCTCGgtaatccttt ... tccttttcagTGCTTCTTCCCACAGAACGTGATATCCAATATCAAAACCCCGCTATTTCTT
EST: gi|30321442|gb|CD004704.1|CD004704
EST:     TGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACCTCG                         TGCTTCTTCCCACAGAACGTGATATCCAATATCAAAACCCCGCTATTTCTT
genomic: TGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACCTCGgtaatccttt ... tccttttcagTGCTTCTTCCCACAGAACGTGATATCCAATATCAAAACCCCGCTATTTCTT
EST: gi|110696063|gb|EE074792.1|EE074792
EST:     TGCAAAGGAACCTGCCATCTTTTTGTTTGAATCATCTTGATCCAACCTCG                         TGCTTCTTCCCACAGAACGTGATATCCAATATCAAAACCCCGCTATTCCTT
genomic: TGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACCTCGgtaatccttt ... tccttttcagTGCTTCTTCCCACAGAACGTGATATCCAATATCAAAACCCCGCTATTTCTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGGTGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACCTCGgtaatcctttttcctcgatttctcttaggcaaatacatgattttaatggattggagtaataggaaattatgtcatggcattagctgtcaaactgaccttgttcttttctcaatatttttctccttttcag

- - GCAAAG
- - - - AAGGAA