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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACTCTACTGATCGGGAGGTTGCCCTTATGATGCTTATGGCATACCTTTCCTACATACTTGCTGAAgtaagatttcttttaacttcttgggcacttccctggcccctgttgtctattggcattgagtgttctatttagattcaacagtagatatatcaatcatttaaagtctttccattgttagtaactttggttgtcctgcag

Basic information

species Vitis vinifera
transcript Vv14s0030g00710.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0030g00710.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os07g47100.2 (Oryza sativa), 5'ss of exon 8
GCACTCTACTGATCGGGAGGTTGCCCTTATGATGCTTATGGCATACCTTTCCTACATACTTGCTGAAgtaagatttcttttaacttcttgggcacttccctggcccctgttgtctattggcattgagtgttctatttagattcaacagtagatat-atcaatcatttaaagtctttccattgttagtaactttggttgtcctgcag
||| |||||||| || |||||||||||||||||||| ||||| |||||||| || || || ||||| ||  |  |    ||   | |     ||        ||   |  | ||  ||   | |  |  || ||| ||  ||      | |||||   ||                                              
GCATTCTACTGACCGTGAGGTTGCCCTTATGATGCTCATGGCTTACCTTTCATATATGCTGGCTGAGgtgtgcctctgctttgatgcagtatcaaaattt--gcatatagtttcattttatagtttg-attttatctactttgtttgtttgatattggcag---------------------------------------------

upper sequence: Vv14s0030g00710.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G027851_T03 (Zea mays), 5'ss of exon 6
GCACTCTACTGATCGGGAGGTTGCCCTTATGATGCTTATGGCATACCTTTCCTACATACTTGCTGAAgtaagatttcttttaacttcttgggcacttccctggcccctgttgtctattggcattgagtg-ttctatttagattcaacagtagatatatcaatcatttaaagtctttccattgttagtaactttggttgtcctgcag
||| || ||||| || |||||||| ||||||||||| ||||| ||||| |||||||| || || || ||     |    | |  |   |||  |      |  | | ||||||||       || | ||  ||| || | ||  |   | |  |  |                                                 
GCATTCCACTGACCGTGAGGTTGCGCTTATGATGCTCATGGCTTACCTCTCCTACATGCTGGCCGAGgtgcacctctgatcagatg--tggcaagggaattcacgcttgttgtcttactctcttaactgactctgttcatatata-tggcatttgcag------------------------------------------------

upper sequence: Vv14s0030g00710.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA03G40290.1 (Glycine max), 5'ss of exon 8
GCACTCTACTGATCGGGAGGTTGCCCTTATGATGCTTATGGCATACCTTTCCTACATACTTGCTGAAgtaagatttcttttaacttcttgggcacttccctggcccctgttgtctattggcattgagtgttctatttagattcaacagtagatatatcaatcattta-aagtctttccattgttagtaactttggttgtcctgcag
||||||||| ||||| |||||||| ||||||||||| |||||||||||||||||||| || |||||||||||     ||| ||   |||  | | |   |||  |  | |    | || |   |   | |    |||   ||     ||| ||  || ||||||| |   ||  |   ||  |  | |                  
GCACTCTACAGATCGTGAGGTTGCTCTTATGATGCTAATGGCATACCTTTCCTACATTCTGGCTGAAgtaag----ttttaaagaacttcagaaatgttctgtacagtatgtcttttttgagctctatatctattttttgtt--gtggtacattcattaatcattaacgggttctgatatattctgcag-----------------

upper sequence: Vv14s0030g00710.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA19G42900.1 (Glycine max), 5'ss of exon 8
GCACTCTACTGATCGGGAGGTTGCCCTTATGATGCTTATGGCATACCTTTCCTACATACTTGCTGAAgtaagatttcttttaacttcttgggcacttccctggcccctgttgtctattggcattgagtgttctatttagattcaacagtagatatatcaatcatttaaagtctttccattgttagtaactttggttgtcctgcag
||||||||| ||||| |||||||| ||||||||||| |||||||||||||||||||| || ||||||||||| |||     ||||||      | ||    |        ||||| || |   |   | | ||||||    |    |   | | | | |   || || |   | | ||                           
GCACTCTACAGATCGTGAGGTTGCTCTTATGATGCTAATGGCATACCTTTCCTACATTCTGGCTGAAgtaag-ttttaaagaacttcagaaatattttgtagagta----tgtctttttgagctctatat-ctattttttcttgtgaaagggt-tctgatatatctacaagttctgcag--------------------------

upper sequence: Vv14s0030g00710.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA20G37370.1 (Glycine max), 5'ss of exon 9
GCACTCTACTGATCGGGAGGTTGCCCTTATGATGCTTATGGCATACCTTTCCTACATACTTGCTGAAgtaagatttcttttaacttcttgggcacttccctggcccctgttgtctattggcattgagtgttctatttagattcaacagtagatatatcaatcatttaaagtctttccattgttagtaactttggttgtcctgcag
||||||||| ||||| |||||||| ||||||||| | ||||||||||| |||||||| ||||||||||||||  || |    | || | |     ||   |||   |||     | ||| |||| |      |||   |||  | |   |  |    ||                                              
GCACTCTACAGATCGCGAGGTTGCTCTTATGATGTTAATGGCATACCTCTCCTACATGCTTGCTGAAgtaag--ttttaaagaattttagtaatgttttatggatgctgcaacat-ttgtcattaa----catatgctgatgtatctacatcttctgcag---------------------------------------------

upper sequence: Vv14s0030g00710.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA10G30020.1 (Glycine max), 5'ss of exon 9
GCACTCTACTGATCGGGAGGTTGCCCTTATGATGCTTATGGCATACCTTTCCTACATACTTGCTGAAgtaagatttcttttaacttcttgggcacttccctggcccctgttgtctattggcattgagtgttctatttagattcaacagtagatatatcaatcatttaaagtctttccattgttagtaactttggttgtcctgcag
||||||||| ||||| |||||||| ||||||||| | ||||||||||| |||||||| ||||||||||||||  || |    | || | |     ||   |||   ||||   |  ||| | ||||       ||   |||  | |   |  | |  ||                                              
GCACTCTACAGATCGTGAGGTTGCTCTTATGATGTTAATGGCATACCTGTCCTACATGCTTGCTGAAgtaag--ttgtaaagaattttagtaatgttttatggatgctgtcaacatttgtcgttga---catgatgctgatgtatctacatctgttgcag---------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161720623|gb|FC070233.1|FC070233
EST:     AGGTTGCCCTTATGATGCTTATGGCATACCTTTCCTACATACTTGCTGAA                         CTATTCTATTTGAGTGGCATTCTCACGGTATTTTTCTGTGGGATTGTAATG
genomic: AGGTTGCCCTTATGATGCTTATGGCATACCTTTCCTACATACTTGCTGAAgtaagatttc ... tgtcctgcagCTATTCTATTTGAGTGGCATTCTCACGGTATTTTTCTGTGGGATTGTAATG