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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGAGGTTTCTGCTACTTGGAAAGATTCTCCCAAGACAGTACTTGACGTTTATCGTGAACTTATACATGCAGGACTCCGTATTTGGATATTCAGgtttctctaaacatttgacatcatttcccttaaaatctgctgcatacttgctagctttgcatgtgatgtgcagctacacttcacttattctaatattggt...

Basic information

species Vitis vinifera
transcript Vv11s0037g00740.t01
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110384773|gb|EC949233.1|EC949233
EST:     GACGTTTATCGTGAACTTATACATGCGGGACTCCGTATTTGGATATTCAG                         TGGTGATACAGATGCCATAATCCCAGTTACATCCACCCGGTACAGTGTAGA
genomic: GACGTTTATCGTGAACTTATACATGCAGGACTCCGTATTTGGATATTCAGgtttctctaa ... tttatgacagTGGTGATACAGATGCCATAATCCCAGTTACATCCACCCGGTACAGTGTAGA
EST: gi|351015461|gb|FQ447290.1|FQ447290
EST:     GACGTTTATCGTGAACTTATACATGCGGGACTCCGTATTTGGATATTCAG                         TGGTGATACAGATGCCATAATCCCAGTTACATCCACCCGGTACAGTGTAGA
genomic: GACGTTTATCGTGAACTTATACATGCAGGACTCCGTATTTGGATATTCAGgtttctctaa ... tttatgacagTGGTGATACAGATGCCATAATCCCAGTTACATCCACCCGGTACAGTGTAGA
EST: gi|110419335|gb|EC985553.1|EC985553
EST:     GACGTTTATCGTGAACTTATACATGCGGGACTCCGTATTTGGATATTCAG                         TGGTGATACAGATGCCATAATCCCAGTTACATCCACCCGGTACAGTGTAGA
genomic: GACGTTTATCGTGAACTTATACATGCAGGACTCCGTATTTGGATATTCAGgtttctctaa ... tttatgacagTGGTGATACAGATGCCATAATCCCAGTTACATCCACCCGGTACAGTGTAGA
EST: gi|29785466|gb|CB342476.2|CB342476
EST:     GACGTTTATCGTGAACTTATACATGCGGGACTCCGTATTTGGATATTCAG                         TGGTGATACAGATGCCATAATCCCAGTTACATCCACCCGGTACAGTGTAGA
genomic: GACGTTTATCGTGAACTTATACATGCAGGACTCCGTATTTGGATATTCAGgtttctctaa ... tttatgacagTGGTGATACAGATGCCATAATCCCAGTTACATCCACCCGGTACAGTGTAGA
EST: gi|351022774|gb|FQ428683.1|FQ428683
EST:     GACGTTTATCGTGAACTTATACATGCGGGACTCCGTATTTGGATATTCAG                         TGGTGATACAGATGCCATAATCCCGGTTACATCCACCCGGTACAGTGTAGA
genomic: GACGTTTATCGTGAACTTATACATGCAGGACTCCGTATTTGGATATTCAGgtttctctaa ... tttatgacagTGGTGATACAGATGCCATAATCCCAGTTACATCCACCCGGTACAGTGTAGA
EST: gi|110361863|gb|EC925365.1|EC925365
EST:     GACGTTTATCGTGAACTTATACATGCGGGACTCCGTATTTGGATATTCAG                         TGGTGATACAGATGCCATAATCCCAGTTACATCCACCCGGTACAGTGTAGA
genomic: GACGTTTATCGTGAACTTATACATGCAGGACTCCGTATTTGGATATTCAGgtttctctaa ... tttatgacagTGGTGATACAGATGCCATAATCCCAGTTACATCCACCCGGTACAGTGTAGA