Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCCTACACACTGTAATATGTTGGCATACAGTAGCTCAAAGGGCTCAATCCGTCTTATTGATTTGCGACAATCGGCTCTCTGTGATAGTCATGCCAAATTgtgagtgatttattaattattaatctatcttacttattcttttaagtgcatttgtccgtgctggaagatctgatttgctactaactccaaaaagcatatcagacctgttgaatttaatttcaaacatgcttttaatagccaacagtaaatgttcatgcag

Basic information

species Vitis vinifera
transcript Vv11s0016g02550.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g02550.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os01g41630.1 (Oryza sativa), 5'ss of exon 8
ACCCTACACACTGTAATATGTTGGCATACAGTAGCTCAAAGGGCTCAATCCGTCTTATTGATTTGCGACAATCGGCTCTCTGTGATAGTCATGCCAAATTgtgagtgatttattaattattaatctatcttacttattcttttaagtgcatttgtccgtgctggaagatctgatttgctactaactccaaaaagcatatcagacctgttgaatttaatttcaaac-atgcttttaatagccaacagtaaatgttcatgcag
||||||| ||||||||||  ||||| || ||||||||||||||||| || || ||| ||||  || | || || || || ||||| | |||| || || |||||||  || |||  ||| | ||   ||||  | | | ||  |  |   ||| |  |     ||  ||||| |    |      ||      | |  |      | ||  |  || |   |  | |||  | ||                          
ACCCTACTCACTGTAATACATTGGCTTATAGTAGCTCAAAGGGCTCCATTCGACTTGTTGACCTGAGGCAGTCAGCCCTTTGTGACACTCATTCCCAAGTgtgagtt-ttcatttgttactcatac-tctttttcaatattcaacata-gtttatttggat--gagcatctggtggattggcctgtcttgttcgtac-tattttttattatagctattcctattctatgtgtgtag-------------------------

upper sequence: Vv11s0016g02550.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: EFJ09063 (Selaginella moellendorffii), 5'ss of exon 8
ACCCTACACACTGTAATATGTTGGCATACAGTAGCTCAAAGGGCTCAATCCGTCTTATTGATTTGCGACAATCGGCTCTCTGTGATAGTCATGCCAAATTgtgagtgatttattaattattaatctatcttacttat-tcttttaagtgcatttgtccgtgctggaagatctgatttgctactaactccaaaaagcatatcagacctgttgaatttaatttcaaacatgcttttaatagccaacagtaaatgttcatgcag
| ||  | ||||| ||||   | || || || |||||||||||  |||| |||||||| ||| |||| ||||||||||| |||||  | ||||| | ||||| |||   || |    ||    |  |    | ||   || ||  | || |                                                                                                              
ATCCCTCCCACTGCAATACTCTTGCTTATAGCAGCTCAAAGGGAACAATTCGTCTTATAGATATGCGGCAATCGGCTCTTTGTGACCGGCATGCTATATTgtaagtt-cttgtcttctacgcgtggactgaagttccatccttccaatgtag-------------------------------------------------------------------------------------------------------------

upper sequence: Vv11s0016g02550.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: EFJ08844 (Selaginella moellendorffii), 5'ss of exon 8
ACCCTACACACTGTAATATGTTGGCATACAGTAGCTCAAAGGGCTCAATCCGTCTTATTGATTTGCGACAATCGGCTCTCTGTGATAGTCATGCCAAATTgtgagtgatttattaattattaatctatcttacttat-tcttttaagtgcatttgtccgtgctggaagatctgatttgctactaactccaaaaagcatatcagacctgttgaatttaatttcaaacatgcttttaatagccaacagtaaatgttcatgcag
| ||  | ||||| ||||   | || || || |||||||||||  |||| |||||||| ||| |||| ||||||||||| |||||  | ||||| | ||||| |||   || |    ||    |  |    | ||   || ||  | || |                                                                                                              
ATCCCTCCCACTGCAATACTCTTGCTTATAGCAGCTCAAAGGGAACAATTCGTCTTATAGATATGCGGCAATCGGCTCTTTGTGACCGGCATGCTATATTgtaagtt-cttgtcttctacgcctggactgaagttccatccttccaatgtag-------------------------------------------------------------------------------------------------------------