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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGgtgcaatttgatttttagtgtttgaaatcatgtagttctggtgatcatttgttaaattcttgcattttgtctggtggcag

Basic information

species Vitis vinifera
transcript Vv10s0003g01480.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os01g10840.1 (Oryza sativa), 5'ss of exon 8
CCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGgtgcaatttgat-ttttagtgtttgaaatcatgtagttctggtgatcatttgttaaattcttgcattttgtctggtggcag
||| ||||||||||||||| ||| || |||||||| || ||||| ||||||||      |||| || |      |  | |  | |  ||     |   |||| ||   ||     | ||  | |  ||||||
CCACTGTTTCCTGGAGAGAGTGCTGTTGACCAGCTAGTAGAGATAATCAAGgtattgcatgatgttgtgcaagctacatttttttttttgccacgggtatttcttgtgtta----acttgatattatggcag

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA08G12370.1 (Glycine max), 5'ss of exon 8
CCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGgtgcaatt--tg-------atttttagtgtttgaaatcatgtagttctggtgatcatttgttaaattcttgcattttgtctggtggcag
|| || |||||||| || |||||||||||||||||||| ||||||||||||||||||||  ||       || ||  || | | |  |||| |   |||  | || |    | || |   |  | | ||| |    |   
CCCTTATTTCCTGGCGAAAATGCAGTGGACCAGCTTGTAGAGATTATCAAGgtgcaattgctgttaccacatgttaggtttctaaggtcatatcactcttttcataagaaatcaactcaataaaatctgtatttcag---

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA05G29200.1 (Glycine max), 5'ss of exon 7
CCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGgtgcaatttg---------atttttagtgtttgaaatcatgtagttctggtgatcatttgttaaattcttgcattttgtctggtggcag
|| || |||||||| || |||||| |||||||||||||||||||||||||||||||||| |         || ||  || | | | | ||| |   ||| || || |    | |  |   |  | | ||| |    |   
CCCTTATTTCCTGGCGAAAATGCACTGGACCAGCTTGTTGAGATTATCAAGgtgcaattggtgttaccacatgttaggtttctaagagcatatcactcttgtcataagaaatcagctcaataaaatctgtatttcag---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349818413|gb|FQ409188.1|FQ409188
EST:     CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG                         GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
genomic: CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGgtgcaatttg ... ctggtggcagGTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
EST: gi|349821008|gb|FQ404261.1|FQ404261
EST:     CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG                         GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
genomic: CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGgtgcaatttg ... ctggtggcagGTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
EST: gi|110370230|gb|EC929161.1|EC929161
EST:     CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG                         GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
genomic: CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGgtgcaatttg ... ctggtggcagGTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
EST: gi|349822004|gb|FQ408333.1|FQ408333
EST:     CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG                         GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
genomic: CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGgtgcaatttg ... ctggtggcagGTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
EST: gi|110716958|gb|EE092396.1|EE092396
EST:     CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG                         GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
genomic: CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGgtgcaatttg ... ctggtggcagGTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
EST: gi|30255733|gb|CB971865.1|CB971865
EST:     CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG                         GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
genomic: CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGgtgcaatttg ... ctggtggcagGTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
EST: gi|349814529|gb|FQ399169.1|FQ399169
EST:     CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG                         GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
genomic: CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGgtgcaatttg ... ctggtggcagGTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
EST: gi|349813455|gb|FQ413689.1|FQ413689
EST:     CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG                         GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
genomic: CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGgtgcaatttg ... ctggtggcagGTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
EST: gi|352786166|gb|FQ478777.1|FQ478777
EST:     CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG                         GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
genomic: CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGgtgcaatttg ... ctggtggcagGTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
EST: gi|349820741|gb|FQ408570.1|FQ408570
EST:     CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG                         GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
genomic: CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGgtgcaatttg ... ctggtggcagGTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
EST: gi|349819490|gb|FQ413374.1|FQ413374
EST:     CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG                         GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
genomic: CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGgtgcaatttg ... ctggtggcagGTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
EST: gi|351041679|gb|FQ455889.1|FQ455889
EST:     CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG                         GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
genomic: CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGgtgcaatttg ... ctggtggcagGTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
EST: gi|349812888|gb|FQ410530.1|FQ410530
EST:     CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG                         GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
genomic: CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGgtgcaatttg ... ctggtggcagGTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
EST: gi|349818025|gb|FQ408014.1|FQ408014
EST:     CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG                         GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
genomic: CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGgtgcaatttg ... ctggtggcagGTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
EST: gi|351045211|gb|FQ451659.1|FQ451659
EST:     CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG                         GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
genomic: CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGgtgcaatttg ... ctggtggcagGTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
EST: gi|27583598|gb|CB006293.1|CB006293
EST:     CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG                         GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
genomic: CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGgtgcaatttg ... ctggtggcagGTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
EST: gi|349808118|gb|FQ403305.1|FQ403305
EST:     CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG                         GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
genomic: CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGgtgcaatttg ... ctggtggcagGTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
EST: gi|30136670|gb|CB922008.1|CB922008
EST:     CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG                         GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
genomic: CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGgtgcaatttg ... ctggtggcagGTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
EST: gi|349818252|gb|FQ409027.1|FQ409027
EST:     CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG                         GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
genomic: CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGgtgcaatttg ... ctggtggcagGTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
EST: gi|349819219|gb|FQ412113.1|FQ412113
EST:     CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG                         GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
genomic: CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGgtgcaatttg ... ctggtggcagGTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
EST: gi|349809698|gb|FQ398305.1|FQ398305
EST:     CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG                         GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
genomic: CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGgtgcaatttg ... ctggtggcagGTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
EST: gi|349820687|gb|FQ408516.1|FQ408516
EST:     CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG                         GTTCTTGGTACACCAACGCGGGAAGAAATTCGCCGTATGAATCCGAGTTAT
genomic: CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGgtgcaatttg ... ctggtggcagGTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
EST: gi|349823319|gb|FQ402518.1|FQ402518
EST:     CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG                         GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
genomic: CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGgtgcaatttg ... ctggtggcagGTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
EST: gi|349811905|gb|FQ410702.1|FQ410702
EST:     CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG                         GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
genomic: CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGgtgcaatttg ... ctggtggcagGTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
EST: gi|349815183|gb|FQ400338.1|FQ400338
EST:     CATTGTTTCCCGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG                         GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
genomic: CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGgtgcaatttg ... ctggtggcagGTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
EST: gi|349820958|gb|FQ408666.1|FQ408666
EST:     CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG                         GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
genomic: CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGgtgcaatttg ... ctggtggcagGTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
EST: gi|351015241|gb|FQ445525.1|FQ445525
EST:     CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG                         GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
genomic: CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGgtgcaatttg ... ctggtggcagGTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
EST: gi|349814811|gb|FQ410034.1|FQ410034
EST:     CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG                         GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
genomic: CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGgtgcaatttg ... ctggtggcagGTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
EST: gi|110727667|gb|EE104690.1|EE104690
EST:     CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG                         GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
genomic: CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGgtgcaatttg ... ctggtggcagGTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
EST: gi|349819618|gb|FQ413502.1|FQ413502
EST:     CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG                         GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
genomic: CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGgtgcaatttg ... ctggtggcagGTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
EST: gi|349820569|gb|FQ404064.1|FQ404064
EST:     CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG                         GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
genomic: CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGgtgcaatttg ... ctggtggcagGTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
EST: gi|351045218|gb|FQ451666.1|FQ451666
EST:     CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG                         GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
genomic: CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGgtgcaatttg ... ctggtggcagGTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
EST: gi|349812635|gb|FQ409794.1|FQ409794
EST:     CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG                         GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
genomic: CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGgtgcaatttg ... ctggtggcagGTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
EST: gi|351046670|gb|FQ453286.1|FQ453286
EST:     CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG                         GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
genomic: CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGgtgcaatttg ... ctggtggcagGTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
EST: gi|349820534|gb|FQ404029.1|FQ404029
EST:     CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG                         GTTCTTGGTACACCAACGCGGGGAGAAATTCGCTGTATGAATCCGAGTTAT
genomic: CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGgtgcaatttg ... ctggtggcagGTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
EST: gi|349827560|gb|FQ422428.1|FQ422428
EST:     CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG                         GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
genomic: CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGgtgcaatttg ... ctggtggcagGTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
EST: gi|110699277|gb|EE076136.1|EE076136
EST:     TTGTTTCCCTGGAGAGAATGCAGTGGACCAGCCTTGTTGAGATTATCAAG                         GGTCTTTGGAACACCAACCCGG-AAGGAAATTCCCTGTATGAATCCCAGTT
genomic: TTGTTTCC-TGGAGAGAATGCAGTGGACCAGC-TTGTTGAGATTATCAAGgtgcaatttg ... ctggtggcagGTTCTT-GGTACACCAACGCGGGAAG-AAATTCGCTGTATGAATCCGAGTT
EST: gi|349820352|gb|FQ403968.1|FQ403968
EST:     CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG                         GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
genomic: CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGgtgcaatttg ... ctggtggcagGTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
EST: gi|352790221|gb|FQ481420.1|FQ481420
EST:     CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG                         GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
genomic: CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGgtgcaatttg ... ctggtggcagGTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
EST: gi|351023667|gb|FQ448218.1|FQ448218
EST:     CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG                         GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
genomic: CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGgtgcaatttg ... ctggtggcagGTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
EST: gi|110699260|gb|EE076105.1|EE076105
EST:     CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAG                         GTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT
genomic: CATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGgtgcaatttg ... ctggtggcagGTTCTTGGTACACCAACGCGGGAAGAAATTCGCTGTATGAATCCGAGTTAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCATTGTTTCCTGGAGAGAATGCAGTGGACCAGCTTGTTGAGATTATCAAGgtgcaatttgatttttagtgtttgaaatcatgtagttctggtgatcatttgttaaattcttgcattttgtctggtggcag

- - - - -  TGGAGA
- - - - - - - - - - -  AGTGGA