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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGCCAAGGAGAACAAGACAACTTTACCTTCAGCAGGGCTTTTTGTTATCAGATACCATTCCTTTTATGgtaagtacaaaaaaatcagagaaatttcttgaaccccatttagcatcaaggctttattttgttattgagttgagggaatgaggaaatttctctaaatatatgtatccaattatacagaacatggtgatttcttgatgaattggtcttaatggaagtgtttcatgtggcag

Basic information

species Vitis vinifera
transcript Vv09s0002g02940.t01
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30302571|gb|CB979365.1|CB979365
EST:     AACTTTACCTTCAGCAGGGCTTTTTGTTATCAGATACCATTCCTTTTATG                         CTTTGCACAGGTCTGATGCATATAAATATCTGATGAATGA
genomic: AACTTTACCTTCAGCAGGGCTTTTTGTTATCAGATACCATTCCTTTTATGgtaagtacaa ... catgtggcagCTTTGCACAGGTCTGATGCATATAAATATCTGATGAATGA
EST: gi|110358571|gb|EC922880.1|EC922880
EST:     AACTTTACCTTCAGCAGGGCTTTTTGTTATCAGATACCATTCCTTTTATG                         CTTTGCACAGGTCTGATGCATATAAATATCTGATGAATGAGGAAGACATTG
genomic: AACTTTACCTTCAGCAGGGCTTTTTGTTATCAGATACCATTCCTTTTATGgtaagtacaa ... catgtggcagCTTTGCACAGGTCTGATGCATATAAATATCTGATGAATGAGGAAGACATTG
EST: gi|110357458|gb|EC921014.1|EC921014
EST:     AACTTTACCTTCAGCAGGGCTTTTTGTTATCAGATACCATTCCTTTTATG                         CTTTGCACAGGTCTGATGCATATAAATATCTGATGAATGAGGAAGACATTG
genomic: AACTTTACCTTCAGCAGGGCTTTTTGTTATCAGATACCATTCCTTTTATGgtaagtacaa ... catgtggcagCTTTGCACAGGTCTGATGCATATAAATATCTGATGAATGAGGAAGACATTG
EST: gi|110357825|gb|EC921593.1|EC921593
EST:     AACTTTACCTTCAGCAGGGCTTTTTGTTATCAGATACCATTCCTTTTATG                         CTTTGCACAGGTCTGATGCATATAAATATCTGATGAATGAGGAAGACATTG
genomic: AACTTTACCTTCAGCAGGGCTTTTTGTTATCAGATACCATTCCTTTTATGgtaagtacaa ... catgtggcagCTTTGCACAGGTCTGATGCATATAAATATCTGATGAATGAGGAAGACATTG
EST: gi|30302644|gb|CB979438.1|CB979438
EST:     AACTTTCCCTTCAGCAGGGCTTTTTGTTATCAGATACCATTCCTTTTATG                         CTTTGCACAGGTCTGATGCATATAAATATCTGATGAATGAGGAAGCCATTG
genomic: AACTTTACCTTCAGCAGGGCTTTTTGTTATCAGATACCATTCCTTTTATGgtaagtacaa ... catgtggcagCTTTGCACAGGTCTGATGCATATAAATATCTGATGAATGAGGAAGACATTG
EST: gi|30302699|gb|CB979493.1|CB979493
EST:     AACTTTACCTTCAGCAGGGCTTTTTGTTATCAGATACCATTCCTTTTATG                         CTTTGCACAGGACTGATGCATATAAATATCTGATGAATGAGGAAGACATTG
genomic: AACTTTACCTTCAGCAGGGCTTTTTGTTATCAGATACCATTCCTTTTATGgtaagtacaa ... catgtggcagCTTTGCACAGGTCTGATGCATATAAATATCTGATGAATGAGGAAGACATTG
EST: gi|110358718|gb|EC923143.1|EC923143
EST:     AACTTTACCTTCAGCAGGGCTTTTTGTTATCAGATACCATTCCTTTTATG                         CTTTGCACAGGTCTGATGCATATAAATATCTGATGAATGAGGAAGACATTG
genomic: AACTTTACCTTCAGCAGGGCTTTTTGTTATCAGATACCATTCCTTTTATGgtaagtacaa ... catgtggcagCTTTGCACAGGTCTGATGCATATAAATATCTGATGAATGAGGAAGACATTG
EST: gi|77582912|gb|DV220448.1|DV220448
EST:     AACTTTACCTTCAGCAGGGCTTTTTGTTATCAGATACCATTCCTTTTATG                         CTTTGCACAGGTCTGATGCATATAAATATCTGATGAATGAGGAAGACATTG
genomic: AACTTTACCTTCAGCAGGGCTTTTTGTTATCAGATACCATTCCTTTTATGgtaagtacaa ... catgtggcagCTTTGCACAGGTCTGATGCATATAAATATCTGATGAATGAGGAAGACATTG
EST: gi|110357023|gb|EC920273.1|EC920273
EST:     AACTTTACCTTCAGCAGGGCTTTTTGTTATCAGATACCATTCCTTTTATG                         CTTTGCACAGGTCTGATGCATATAAATATCTGATGAATGAGGAAGACATTG
genomic: AACTTTACCTTCAGCAGGGCTTTTTGTTATCAGATACCATTCCTTTTATGgtaagtacaa ... catgtggcagCTTTGCACAGGTCTGATGCATATAAATATCTGATGAATGAGGAAGACATTG
EST: gi|45771218|gb|CN007070.1|CN007070
EST:     AACTTTACCTTCAGCAGGGCTTTTTGTTATCAGATACCATTCCTTTTATG                         CTTTGCACAGGTCTGATGCATATAAATATCTGATGAATGAGGAAGACATTG
genomic: AACTTTACCTTCAGCAGGGCTTTTTGTTATCAGATACCATTCCTTTTATGgtaagtacaa ... catgtggcagCTTTGCACAGGTCTGATGCATATAAATATCTGATGAATGAGGAAGACATTG
EST: gi|110358259|gb|EC922343.1|EC922343
EST:     AACTTTACCTTCAGCAGGGCTTTTTGTTATCAGATACCATTCCTTTTATG                         CTTTGCACAGGTCTGATGCATATAAATATCTGATGAATGAGGAAGACATTG
genomic: AACTTTACCTTCAGCAGGGCTTTTTGTTATCAGATACCATTCCTTTTATGgtaagtacaa ... catgtggcagCTTTGCACAGGTCTGATGCATATAAATATCTGATGAATGAGGAAGACATTG
EST: gi|30302765|gb|CB979559.1|CB979559
EST:     AACTTTACCTTCAGCAGGGCTTTTTGTTATCAGATACCATTCCTTTTATG                         CTTTGCACAGGTCTGATGCATATAAATATCTGATGAATGAGGAAGACATTG
genomic: AACTTTACCTTCAGCAGGGCTTTTTGTTATCAGATACCATTCCTTTTATGgtaagtacaa ... catgtggcagCTTTGCACAGGTCTGATGCATATAAATATCTGATGAATGAGGAAGACATTG