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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATATTCTTCTCCAACTGTTGTTGATTTGGATGGTGATGGGAATTTGGACATTCTTGTTGGAACCTCCTTCGGCTTGTTTTATGTCCTTGATCATCATGgtaatcttctaagattggaattttttttttaattctttctaattgatgcatatgattagatcatattttctcattattcttagcttgattttggtttaaa...

Basic information

species Vitis vinifera
transcript Vv08s0007g01790.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0007g01790.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os03g61050.1 (Oryza sativa), 5'ss of exon 8
ATATATTCTTCTCCAACTGTTGTTGATTTGGATGGTGATGGGAATTTGGACATTCTTGTTGGAACCTCCTTCGGCTTGTTTTATGTCCTTGATCATCATGgtaatcttctaagattggaattttttttttaattctttctaattgatgcatatgattagatcatattttctcattattcttagcttgattttg--gtttaaa
  ||||||||| || || || |||||||||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||  | ||||||| ||||||  |  |||  |   ||| |   || | | ||  |  ||  | |  |         ||  | || | |   | |   || || | |   |  |  ||||
GCATATTCTTCGCCGACCGTGGTTGATTTGGATGGTGATGGAAATTTGGATATTCTTGTTGGAACTTCCTTTGGCTTGTTTTATGTTATCGATCATCGTGgtaaattcttaacctcataatatcaattctgaatccata-aacagctttaagctgacttattgttttctat-gctgtgtatatctagctcccgtagcataaa

upper sequence: Vv08s0007g01790.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G479744_T01 (Zea mays), 5'ss of exon 4
ATATATTCTTCTCCAACTGTTGTTGATTTGGATGGTGATGGGAATTTGGACATTCTTGTTGGAACCTCCTTCGGCTTGTTTTATGTCCTTGATCATCATGgtaatcttctaagattggaattttttttttaattctttctaattgatgcatatgattagatcatattttct-cattattcttagcttga-ttttggtttaaa
 | | ||| ||||||||||| ||||||||||||||||||||  |||||||||| ||| |||| ||  | |  ||||||||||||||  ||||||||| ||||||  || |    |   ||| ||||     |||   || ||  || |  | |  | || |  | ||| ||  ||| | |  |  |  | |||   | ||| 
GTGTTTTCCTCTCCAACTGTGGTTGATTTGGATGGTGATGGATATTTGGACATCCTTATTGGGACTGCTTATGGCTTGTTTTATGTTATTGATCATCGTGgtaagtttttggtctcttaatattttaag-gattggatccaaaagaagtttttt-tgagctggtttttcctatattttgcacatatcaagtttctatataat

upper sequence: Vv08s0007g01790.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA03G14690.1 (Glycine max), 5'ss of exon 10
ATATATTCTTCTCCAACTGTTGTTGATTTGGATGGTGATGGGAATTTGGACATTCTTGTTGGAACCTCCTTCGGCTTGTTTTATGTCCTTGATCATCATGgtaatcttctaagattggaattttttttttaattctttctaattgatgcatatgattagatcatattttc-tcattattcttagcttgattttggtttaaa
||||||||||| ||||||||||| ||||||||||||||||||||| | ||||||||||||||||| || |  ||| ||||||||||  | ||||||||||||||| |     || ||     ||  | ||| |  | | | |   | |   | | ||  ||  |   ||| |   | |||| || ||   ||| ||| |  
ATATATTCTTCCCCAACTGTTGTAGATTTGGATGGTGATGGGAATCTTGACATTCTTGTTGGAACTTCATATGGCCTGTTTTATGTGTTAGATCATCATGgtaatgtctagggactgcttccttactattactcttgttttaaaaacgttcaggtttctatgttgccttcattgattttctcagattttatttcgttaat-

upper sequence: Vv08s0007g01790.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA01G27250.1 (Glycine max), 5'ss of exon 8
ATATATTCTTCTCCAACTGTTGTTGATTTGGATGGTGATGGGAATTTGGACATTCTTGTTGGAACCTCCTTCGGCTTGTTTTATGTCCTTGATCATCATGgtaatcttctaagattggaattttttttttaattctttctaattgatgcatatgat-tagatcatattttctcattat-tcttagcttgattttggtttaaa
||||||||||| |||||||| || |||||||||||||| |||||| | ||||||||||||||||| || |  ||| ||||||||||  | ||||||||||||||| |    ||| ||     ||  | ||  |  | | | |   |||   | | | ||  |    ||   | ||| | ||| || ||   ||| ||| |  
ATATATTCTTCCCCAACTGTCGTAGATTTGGATGGTGACGGGAATCTTGACATTCTTGTTGGAACTTCGTATGGCCTGTTTTATGTGTTGGATCATCATGgtaatgtctagagactgcttccttactatttctgttgttttaaaaatgttcaggttctatgttgccttcattgattttctctcagattttatttcgttaa--

upper sequence: Vv08s0007g01790.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT3G09090.1 (Arabidopsis thaliana), 5'ss of exon 8
ATATATTCTTCTCCAACTGTTGTTGATTTGGATGGTGATGGGAATTTGGACATTCTTGTTGGAACCTCCTTCGGCTTGTTTTATGTCCTTGATCATCATGgtaa-tcttctaagattggaattttttttttaattctttctaattgatgcatatgattagatcatattttctcattattcttagct-tgattttggtttaaa-
|| |||||||| ||||| ||||||||||||||||| |||||  ||||||| || ||||| ||||| ||||| ||||| || || | | | ||||||| |||||| ||||||     |    |  |  | || ||| | |   |||||||   ||  |    |     || ||  || | |  |||  || || | |    |  
ATTTATTCTTCACCAACGGTTGTTGATTTGGATGGCGATGGTTATTTGGATATCCTTGTCGGAACTTCCTTTGGCTTATTCTACGCCATGGATCATCGTGgtaagtcttcttg---ttacttcctgctgtttattttcttgcattgatgacaattctgcatttcctgttactgtttttaccaagcaatgcttctagcaggagc