1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GGCCGCTTTGAAACACTTGAAGATAGACCGTGTCAAGAAGTATGAATACTGCCTACCATgtgagttctcaaactatttgcagatgtttggactggagtatcctacactgaccctattagagatggcttctttgtaactaagaatccttgttgtcattgc...
species | Vitis vinifera |
transcript | Vv07s0031g01480.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AAACACTTGAAGATAGACCGTGTNCA-GAAGTATGAATACTGCCTACCAT ATTTTTATCAGCCATTCAAGGAAGATGAGCTGGAGCAAAGTACTGAGGTTCEST: gi|77585124|gb|DV221654.1|DV221654
genomic: AAACACTTGAAGATAGACCGTGT-CAAGAAGTATGAATACTGCCTACCATgtgagttctc ... ctgttaacagATTTTTATCAGCCATTCAAGGAAGATGAGCTGGAGCAGAGTACTGAGGTTC
EST: GAAACACTTGAAGATAGACCGTGTCAAGAAGTATGAATACTGCCTACCAT ATTTTTATCAGCCATTCAAGGAAGATGAGCTGGAGCAGAGTACTGAGGTTCEST: gi|22014631|gb|BQ799665.1|BQ799665
genomic: GAAACACTTGAAGATAGACCGTGTCAAGAAGTATGAATACTGCCTACCATgtgagttctc ... ctgttaacagATTTTTATCAGCCATTCAAGGAAGATGAGCTGGAGCAGAGTACTGAGGTTC
EST: AGAAGTATGAATACTGCCTACCAT A-TTTTATCAGCCATTCAAGGAAGATGAGCTGGAGCAGAGTACTGAGGTTCEST: gi|351021609|gb|FQ430496.1|FQ430496
genomic: AGAAGTATGAATACTGCCTACCATgtgagttctc ... ctgttaacagATTTTTATCAGCCATTCAAGGAAGATGAGCTGGAGCAGAGTACTGAGGTTC
EST: GAAACACTTGAAGATAGACCGTGTCAAGAAGTATGAATACTGCCTACCAT ATTTTTATCAG
genomic: GAAACACTTGAAGATAGACCGTGTCAAGAAGTATGAATACTGCCTACCATgtgagttctc ... ctgttaacagATTTTTATCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCCGCTTTGAAACACTTGAAGATAGACCGTGTCAAGAAGTATGAATACTGCCTACCATgtgagttctcaaactatttgcagatgtttggactggagtatcctacactgaccctattagagatggcttctttgtaactaagaatccttgttgtcattgc
- - - - - - - - TTGAAG
- - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aactaaga