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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTAATGCTGATTATGCTATGGATTTGCACCAGAAAGAACAATTTCATGACAATACTGTATCTATGATGCAATCTCAGCACTTCTCTgtgagtactagattttcagcttttgagaaattctgaatgcttctatcatattatattatgctttggatgtcatgaatttgcattttacccttatgcttccctgtttcattgagcag

Basic information

species Vitis vinifera
transcript Vv06s0004g03940.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g03940.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA11G15480.1 (Glycine max), 5'ss of exon 8
GTGGTAATGCTGATTATGCTATGGATTTGCACCAGAAAGAACAATTTCATGACAATACTGTATCTATGATGCAATCTCAGCACTTCTCTgtgagtactagattttcagcttttgagaaattctga--atgcttctatcatattatattatgctttggatgtcatgaatttgcattttacccttatgcttccctg-tttcattgagcag
|||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||  | ||||||||||||||||| ||||||||| ||   |  || | |       | ||||  |    ||     |||| | || ||  ||  ||      |||  |   ||   ||    || |   |||| || ||||  |  ||||
GTGGTAATGCAGATTATGCTATGGATATGCACCAGAAAGAACAACTTCATGACAATACTGTGCCAATGATGCAATCTCAGCATTTCTCTgtgggttacattttataaaagacaaaaaaatcttatctatatacatatccttttgtacaatatttgatggatcaaaacactgttctt----ctgaactttccatgctttctatctgcag

upper sequence: Vv06s0004g03940.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA12G07970.1 (Glycine max), 5'ss of exon 8
GTGGTAATGCTGATTATGCTATGGATTTGCACCAGAAAGAACAATTTCATGACAATACTGTATCTATGATGCAATCTCAGCACTTCTCTgtgagtactagattttcagcttttgagaaattctg--aatgcttctatcatattatattatgctttggatgtcatgaatttgcattttacccttatgcttccctg-tttcattgagcag
|||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||| ||||  | ||||||||||||||||| ||||||||| ||   |   | | |       ||||||  |    ||     |||| | || ||  ||  ||      |||  |   ||   |     || |   |||| || ||||  |  ||||
GTGGTAATGCAGATTATGCTATGGATATGCACCAGAAAGAACAACTTCATGACAATGCTGTGCCAATGATGCAATCTCAGCATTTCTCTgtgggttacattatataaaagacaaagaaatcttatctatatacatatccttttgtacaatatttgatggatcaaaacactgttctcatttctgaactttccgtgctttctatctgcag

upper sequence: Vv06s0004g03940.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA15G04780.1 (Glycine max), 5'ss of exon 9
GTGGTAATGCTGATTATGCTATGGATTTGCACCAGAAAGAACAATTTCATGACAATACTGTATCTATGATGCAATCTCAGCACTTCTCTgtgagtactagattttcagcttttgagaaattctgaatgcttctatcatattatattatgctttggatgtcatgaat---ttgcattttacccttatgcttccctgt-ttcattgagcag
|||||||| | |||| |||||||||| || |||||||||||||| ||||||| |||||||| || |||||||||||||| || ||||| ||||||   |  ||  ||    || ||| ||  |   |   |  ||  | | || ||||| ||   ||   || |||   |   | |  |  || |  |||   ||  || | |  ||||
GTGGTAATTCAGATTTTGCTATGGATATGTACCAGAAAGAACAACTTCATGATAATACTGTGTCAATGATGCAATCTCAACATTTCTCCgtgagtttcatgttgccaaaaattaagatatcttttctatatacatttt-tcatgttatgtttataataatattaatggatcaaaatccattctcaatcttgtttgcctttaatctgcag

upper sequence: Vv06s0004g03940.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA13G40650.1 (Glycine max), 5'ss of exon 8
GTGGTAATGCTGATTATGCTATGGATTTGCACCAGAAAGAACAATTTCATGACAATACTGTATCTATGATGCAATCTCAGCACTTCTCTgtgagtactagattttcagcttttgagaaattctgaatgcttctatcatattatattatgctttggatgtcatgaat---ttgcattttacccttatgcttccctgt-ttcattgagcag
|||||||| | |||| |||||||||| || |||||||||||||| ||||||| |||||  | || |||||||||||||| || ||||| ||||||   | | |   |     | | | ||  |   | ||     ||| |||| ||||| ||   ||   || |||   |   | |  |  || |  |||   ||  || | |  ||||
GTGGTAATTCAGATTTTGCTATGGATATGTACCAGAAAGAACAACTTCATGATAATACCATGTCAATGATGCAATCTCAACATTTCTCCgtgagtttcatagtgcaaaaaaataacatatctt---ttctatatacattttatgttatgtttataataatattaatggatcaaaatccattctcaatcttgtttgcctttaatctgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30305309|gb|CB982103.1|CB982103
EST:     AACAATTTCATGACAATACTGTATCTATGATGCAATCTCAGCACTTCTCT                         ATGGGAAGATCTGCTGGGTTCAACTTGGGGGGATCATACTCCTCTCATCGT
genomic: AACAATTTCATGACAATACTGTATCTATGATGCAATCTCAGCACTTCTCTgtgagtacta ... cattgagcagATGGGAAGATCTGCTGGGTTCAACTTGGGGGGATCATACTCCTCTCATCGT
EST: gi|30305245|gb|CB982039.1|CB982039
EST:     AACAATTTCATGACAATACTGTATCTATGATGCAATCTCAGCACTTCTCT                         ATGGGAAGATCTGCTGGGTTCAACTTGGGGGGATCATACTCCTCTCATCGT
genomic: AACAATTTCATGACAATACTGTATCTATGATGCAATCTCAGCACTTCTCTgtgagtacta ... cattgagcagATGGGAAGATCTGCTGGGTTCAACTTGGGGGGATCATACTCCTCTCATCGT
EST: gi|110719513|gb|EE094707.1|EE094707
EST:     AACAATTTCATGACAATACTGTATCTATGATGCAATCTCAGCACTTCTCT                         ATGGGAAGATCTGCTGGGTTCAACTTGGGGGGATCATACTCCTCTCATCGT
genomic: AACAATTTCATGACAATACTGTATCTATGATGCAATCTCAGCACTTCTCTgtgagtacta ... cattgagcagATGGGAAGATCTGCTGGGTTCAACTTGGGGGGATCATACTCCTCTCATCGT