1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AAATGACGAGGAAAATCAAGCCTTCTCTAATCTTTTAAAACTTTCCAGATTCCCACAGgtaaagtatggcagaaataatttcactagcttatatatatatatatatatatatatgtgcaagtctggtttggtattttaccatctttgccagttctctg...
species | Vitis vinifera |
transcript | Vv01s0146g00120.t01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AGGAAAATCANGCCTTCTCTAATCTTTTAAA-CTTTCCAGATTCCCACAN GTTTATGTAAA-TTCAGTEST: gi|351056524|gb|FQ455176.1|FQ455176
genomic: AGGAAAATCAAGCCTTCTCTAATCTTTTAAAACTTTCCAGATTCCCACAGgtaaagtatg ... attgcgacagGTTTATGTAAAATTCAGT
EST: AGGAAAATCAAGCCTTCTCTAATCTTTTAAAACTTTCCAGATTCCCACAG GTTTATGTAAAATTCAGTGCCCTATTCANGGTGTCAAGACTGTCACCCTC-EST: gi|110382591|gb|EC946898.1|EC946898
genomic: AGGAAAATCAAGCCTTCTCTAATCTTTTAAAACTTTCCAGATTCCCACAGgtaaagtatg ... attgcgacagGTTTATGTAAAATTCAGTGCCCTATTCAGGGTGTCAAGACTGCCACC-TCC
EST: AGGAAAATCAAGCCTTCTCTAATCTTTTAAAACTTTCCAGATTCCCACAG GTTTATGTAAAATTCAGTGCCCTATTCAGGGTGTCAAGACTGCCACCTCCAEST: gi|110724885|gb|EE101102.1|EE101102
genomic: AGGAAAATCAAGCCTTCTCTAATCTTTTAAAACTTTCCAGATTCCCACAGgtaaagtatg ... attgcgacagGTTTATGTAAAATTCAGTGCCCTATTCAGGGTGTCAAGACTGCCACCTCCA
EST: AGGAAAATCAAGCCTTCTCTAATCTTTTAAAACTTTCCAGAATCCCACAG GTTTATGTNAAATTCAGTGCCCTATTCAGGGTGGTCA-GACTGCCACCTCCEST: gi|110367255|gb|EC931182.1|EC931182
genomic: AGGAAAATCAAGCCTTCTCTAATCTTTTAAAACTTTCCAGATTCCCACAGgtaaagtatg ... attgcgacagGTTTATGTAAAATTCAGTGCCCTATTCAGGGTG-TCAAGACTGCCACCTCC
EST: AGGAAAATCAAGCCTTCTCTAATCTTTTAAAACTTTCCAGATTCCCACAG GTTTATGTAAAATTCAGTGCCCTATTCAGGGTGTCAAGACTGCCACCTCCA
genomic: AGGAAAATCAAGCCTTCTCTAATCTTTTAAAACTTTCCAGATTCCCACAGgtaaagtatg ... attgcgacagGTTTATGTAAAATTCAGTGCCCTATTCAGGGTGTCAAGACTGCCACCTCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATGACGAGGAAAATCAAGCCTTCTCTAATCTTTTAAAACTTTCCAGATTCCCACAGgtaaagtatggcagaaataatttcactagcttatatatatatatatatatatatatgtgcaagtctggtttggtattttaccatctttgccagttctctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaataa