Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCACGAACAAAGTACTTCTCATCAGCACTTTGGACTTTCAACTTATTTTTTCTTATATATAATCGTATTCATGAAGGATATTCATTCTCCACTTTTGGgtgagctctctaagctaggatataaattattggttgctttgagtagtcagatgttcaacccatgcctactcacttatgattgtaaatgcttattttgcatag

Basic information

species Vitis vinifera
transcript Vv00s0559g00010.t01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0559g00010.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA10G41940.1 (Glycine max), 5'ss of exon 5
TTGCACGAACAAAGTACTTCTCATCAGCACTTTGGACTTTCAACTTATTTTTTCTTATATATAATCGTATTCATGAAGGATATTCATTCTCCACTTTTGGgtgagctctctaagctaggatataaat---tattggttgctttgagtagtcagatgttcaacccatgcctactcacttatgattgtaaatgcttattttgcatag
||||||  |   |||||||  |    | | |||||| || |||| |||| |||||| | | |||||| ||| ||||||||||||||||||| |  |||||||||| |   |||| |  | | ||      ||||   ||||  ||||| |   || ||| ||  | |  ||   | |||  |||| |                  
TTGCACAGAAGGAGTACTTTCCTCTTGTAGTTTGGAGTTACAACATATTGTTTCTTCTCTGTAATCGGATTTATGAAGGATATTCATTCTCTATATTTGGgtgagatgcataaggtttgttgtattgttatattttatgctaggagtaattctat-ttccacttaagattatgtatttac-attgcag-----------------

upper sequence: Vv00s0559g00010.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA20G25100.1 (Glycine max), 5'ss of exon 6
TTGCACGAACAAAGTACTTCTCATCAGCACTTTGGACTTTCAACTTATTTTTTCTTATATATAATCGTATTCATGAAGGATATTCATTCTCCACTTTTGGgtgagctctctaagctaggatata--aat-tattggttgctttgagtagtcagatgttcaacccatgcctactcacttatgattgtaaatgcttattttgcatag
||||||  |   |||||||  |    | | |||||| || |||| |||| |||||| | | |||||| ||| ||||||||||||||||||| |  ||||||| ||     |||| |  | | ||  | | ||||   ||||  ||||| |   || ||| ||  | |  ||   | |||  |||| |                  
TTGCACAGAAGGAGTACTTTCCTCTTGTAGTTTGGAGTTACAACATATTGTTTCTTCTCTGTAATCGGATTTATGAAGGATATTCATTCTCTATGTTTGGgtaagaggcataagatttgttttactattatattttatgctaggagtaattctat-ttccacttaagattatgtatttac-attgcag-----------------

upper sequence: Vv00s0559g00010.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: AT1G57600.1 (Arabidopsis thaliana), 5'ss of exon 5
TTGCACGAACAAAGTACTTCTCATCAGCACTTTGGACTTTCAACTTATTTTTTCTTATATATAATCGTATTCATGAAGGATATTCATTCTCCACTTTTGGgtgagctctctaag-ctaggatataaattattggttgctttgagtagtcagatgttcaacccatgcctactcacttatgattgtaaatgcttattttgcatag-
||||||| || |  |||||  | |     || |||||||||||| ||||||||||  | |  ||||| ||| ||||||||||||| ||||||| ||| ||||||| | | |||  ||   || | |   |     | ||| |||| ||   ||| |          ||   |||||    |  ||| | ||   ||||   |  
TTGCACGGACTAGTTACTTTCCTTACATGCTGTGGACTTTCAACATATTTTTTCTCTTCTGCAATCGCATTTATGAAGGATATTCTTTCTCCATTTTCGGgtgagttatgtaaatctcacatttgacacaca---tacttggagttgttgtatggttgctgtgaagcttaacactt----tgataatttctctctttgtccaag