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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAGAGAAGTGATGACACCTCTTGTGGATGTTGTTGCAATTGATGCCAGTGCAACACTTGTTGATTTCCATGAATTGTGGCTGACTCATCAGTACTCCAGgtatgataaagttacagctggtttggatatgtgattatataattcttaaccccacatctaatattttatgaacatccttccag

Basic information

species Vitis vinifera
transcript Vv19s0090g01820.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0090g01820.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os03g39640.1 (Oryza sativa), 5'ss of exon 7
TTAGAGAAGTGATGACACCTCTTGTGGATGTTGTTGCAATTGATGCCAGTGCAACACTTGTTGATTTCCATGAATTGTGGCTGACTCATCAGTACTCCAGgtatgataaagttacagctggtttggatatgtgattatataattcttaaccccacatctaatattttatgaacatccttccag
| || || || ||||| ||||| |||||||| |||||||||||||| |  ||||||||  |||||||| |  | || |||   |||||||||||||| ||||||          ||||||   || |  | |  | ||  |  |   |  |       | | || |   |  | | |||||||
TCAGGGAGGTAATGACGCCTCTGGTGGATGTAGTTGCAATTGATGCTACCGCAACACTGATTGATTTCAAAAACTTATGGGAAACTCATCAGTACTCTAGgtat--------ctcagctg---tgaacttttagt-atgcatcttcaattcttgttgttgacatgtgcagctcttacttccag

upper sequence: Vv19s0090g01820.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA14G01920.1 (Glycine max), 5'ss of exon 7
TTAGAGAAGTGATGACACCTCTTGTGGATGTTGTTGCAATTGATGCCAGTGCAACACTTGTTGATTTCCATGAATTGTGGCTGACTCATCAGTACTCCAGgtatgataaagttacagctggttt-ggatatgtgattatataattcttaaccccacatctaatattttatgaacatccttccag
| |||||||| ||||| |||||||| |||||||||||||||||||| ||| |||  || || || || ||| | |||||| | || ||||||||||| ||||||   ||  || |  ||| |||   || |   || |  | | | ||  |         | ||  | |||||     | | ||
TCAGAGAAGTTATGACGCCTCTTGTTGATGTTGTTGCAATTGATGCAAGTTCAAGCCTGGTAGACTTTCATCACTTGTGGGTCACACATCAGTACTCAAGgtatttgaagatttc--ctgatttcaaatttacaatgactttacttttc-caatgtgctaactagatcatgaagcgtttcctag

upper sequence: Vv19s0090g01820.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA02G46780.1 (Glycine max), 5'ss of exon 7
TTAGAGAAGTGATGACACCTCTTGTGGATGTTGTTGCAATTGATGCCAGTGCAACACTTGTTGATTTCCATGAATTGTGGCTGACTCATCAGTACTCCAGgtatgataaagttacagctggtttggatatgtgattatataattcttaaccccacatctaatattttatgaacatccttccag
| ||||| || |||||||||||||| |||||||||||||||||||| ||| |||  || || || || ||| | |||||| | || ||||||||||| ||||||  | ||| |      | ||   || |    | || | | | ||  |         | |   | ||||      | | ||
TCAGAGAGGTTATGACACCTCTTGTTGATGTTGTTGCAATTGATGCAAGTTCAAGCCTGGTAGACTTTCATCACTTGTGGGTCACACATCAGTACTCAAGgtattttgaagatttccaggtttcaaatttacagtgattttacttttc-caatgtgctaattgaatcatgacacgtttcctag