Sequence
atgc intronic sequence ATGC exonic sequenceTCACCTGCATATACTTCCTTCCATGAATCCTGATGGATTTTCACTTAGGAGGCGTGGCAATGCAAATAATATTGATCTTAATCGTGATTTTCCAGATCAGgtatcttttctgcatcacttgttcccttttatttggacatttacaatccagattgagtttgtttttgaaatgtgtaactggtatttgaaaaatggagaaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0157g00050.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G106683_T01 (Zea mays), 5'ss of exon 7
TCACCTGCATATACTTCCTTCCATGAATCCTGATGGATTTTCACTTAGGAGGCGTGGCAATGCAAATAATATTGATCTTAATCGTGATTTTCCAGATCAGgtat----cttttctgcatcac-ttgttcccttttatttggacatttacaatccagattgag----tttgtttttg-aaatgtgtaactggtatttga-aaaatggagaaa-------------------------------
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GCACCTTCATATACTTCCGACGATGAACCCTGATGGGTTTGCTCTTAGATGGCGTGGTAATGCAAACAATATTGATCTCAACAGGGATTTTCCTGACCAAgtgagttacttctttacattacacctcttttccttatggaagcttctacttccctttttgtaccccttttttcttgtagccattaaattgacacgagccaaaattgacagttcttccccgttaacaacgatattgactacag
upper sequence: Vv18s0157g00050.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G106683_T02 (Zea mays), 5'ss of exon 7
TCACCTGCATATACTTCCTTCCATGAATCCTGATGGATTTTCACTTAGGAGGCGTGGCAATGCAAATAATATTGATCTTAATCGTGATTTTCCAGATCAGgtat----cttttctgcatcacttgttccctt-ttatttggacatttacaatccagattgag----tttgtttttg-aaatgtgtaactggtatttga-aaaatggagaaa
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GCACCTTCATATACTTCCGACGATGAACCCTGATGGGTTTGCTCTTAGATGGCGTGGTAATGCAAACAATATTGATCTCAACAGGGATTTTCCTGACCAAgtgagttacttctttacattacacctcttttccttatggaagcttctacttccctttttgtaccccttttttcttgtagccattaaattgacacgagccaaaattgacag-
upper sequence: Vv18s0157g00050.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G127941_T01 (Zea mays), 5'ss of exon 6
TCACCTGCATATACTTCCTTCCATGAATCCTGATGGATTTTCACTTAGGAGGCGTGGCAATGCAAATAATATTGATCTTAATCGTGATTTTCCAGATCAGgtat----cttttctgcatcac-ttgttcccttttatttggacatttacaatccagattgagtttgtttttgaaatgtgtaactggtatttgaaaaatggagaaa
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GCACCTTCATATACTTCCGACAATGAACCCTGATGGGTTTGCTCTTAGATGGCATGGTAATGCAAACAATATTGATCTCAACAGGGATTTTCCTGACCAAgtgagttacttctttacattacacctcttttccttatggaagcttctacttccctttttgtactcatttttt---cttgtagccattcaattgacactagccg--
upper sequence: Vv18s0157g00050.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA10G36590.1 (Glycine max), 5'ss of exon 7
TCACCTGCATATACTTCCTTCCATGAATCCTGATGGATTTTCACTTAGGAGGCGTGGCAATGCAAATAATATTGATCTTAATCGTGATTTTCCAGATCAGgtatct-tttctgcatcacttgttcccttttatttggacatttacaatccagattga-gtttgtttttgaaatgtgtaactggtatttgaaaaatggagaaa-
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TCACCTTCATTTACTTCCATCAATGAATCCTGATGGTTTTAGTTTAAGAAAGCGTGGTAATGCTAATAATATTGATCTGAATCGGGATTTTCCTGACCAGgtatatatctgttttttaatagtaatctgtatacagtatgttgataaagttggttgaaggtcattgttactatg---aaatcaaattctaatattagaatcaa
upper sequence: Vv18s0157g00050.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA20G31000.1 (Glycine max), 5'ss of exon 7
TCACCTGCATATACTTCCTTCCATGAATCCTGATGGATTTTCACTTAGGAGGCGTGGCAATGCAAATAATATTGATCTTAATCGTGATTTTCCAGATCAGgtatct-tttctgcatcacttgttcccttttatttggacatttacaatccagattgagtttgtttttgaaatgtgtaactgg---tatttgaaaaatggagaaa
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TCACCTTCATTTACTTCCATCAATGAATCCTGATGGGTTTAGTTTAAAAAAGCGTGGTAATGCTAATAATATTGATCTGAATCGGGATTTTCCTGACCAGgtatatatatatatat-atattttaatagtaatctgtataa--agtatgttgataaagttggtttaaggt-tgtggaggatgctttattcttctgctggacatgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161718235|gb|FC066954.1|FC066954EST: GGCGTGGCAATGCAAATAATATTGATCTTAATCGTGATTTTCCAGATCAG TTCTTTCCTCTGAATGATGATGTGGATGGACGACAACCTGAAACAAAAGCA
genomic: GGCGTGGCAATGCAAATAATATTGATCTTAATCGTGATTTTCCAGATCAGgtatcttttc ... aatgacacagTTCTTTCCTCTGAATGATGATGTGGATGGACGACAACCTGAAACAAAAGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCACCTGCATATACTTCCTTCCATGAATCCTGATGGATTTTCACTTAGGAGGCGTGGCAATGCAAATAATATTGATCTTAATCGTGATTTTCCAGATCAGgtatcttttctgcatcacttgttcccttttatttggacatttacaatccagattgagtttgtttttgaaatgtgtaactggtatttgaaaaatggagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaat