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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATGTGGAACTTGAACCGAAAAGGAAGGCAGTTCCCCGAAGAGAAACTCCAAATAAGCCAAACCAAACGCCTCCCATTCCTACTTCTGTTGCTCTAAATgtatactacctaatcaaaaacttcaaaatttgcttggtttttctgcttttatgagcttattggttctttatgatttgcag

Basic information

species Vitis vinifera
transcript Vv18s0072g00460.t01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34548933|gb|CF517165.1|CF517165
EST:     CAAATAAGCCAAACCAAACGCCTCCCATTCCTACTTCTGTTGCTCTAAAT                         AAACAGAGGGAGCAGAAAGACAGCCTCGTAGATGAAGAAAAATTGGCTTCG
genomic: CAAATAAGCCAAACCAAACGCCTCCCATTCCTACTTCTGTTGCTCTAAATgtatactacc ... tgatttgcagAAACAGAGGGAGCAGAAAGACAGCCTCGTAGATGAAGAAAAATTGGCTTCG
EST: gi|33407190|gb|CF212817.1|CF212817
EST:     CAAATAAGCCAAACCAAACGCCTCCCATTCCTACTTCTGTTGCTCTAAAT                         AAACAGAGGGAGCAGATCGACAGCCTCGTAGATGAAGAAAAATTGGCTTCG
genomic: CAAATAAGCCAAACCAAACGCCTCCCATTCCTACTTCTGTTGCTCTAAATgtatactacc ... tgatttgcagAAACAGAGGGAGCAGAAAGACAGCCTCGTAGATGAAGAAAAATTGGCTTCG
EST: gi|110425162|gb|EC991541.1|EC991541
EST:     CAAATAAGCCAAACCAAACGCCTCCCATTCCTACTTCTGTTGCTCTAAAT                         AAACAGAGGGAGCAGAAAGACAGCCTCGTAGATGAAGAAAAATTGGCTTCG
genomic: CAAATAAGCCAAACCAAACGCCTCCCATTCCTACTTCTGTTGCTCTAAATgtatactacc ... tgatttgcagAAACAGAGGGAGCAGAAAGACAGCCTCGTAGATGAAGAAAAATTGGCTTCG
EST: gi|110415787|gb|EC981720.1|EC981720
EST:     CAAATAAGCCAAACCAAACGCCTCCCATTCCTACTTCTGTTGCTCTAAAT                         AAACAGAGGGAGCAGAAAGACAGCCTCGTAGATGAAGAAAAATTGGCTTCG
genomic: CAAATAAGCCAAACCAAACGCCTCCCATTCCTACTTCTGTTGCTCTAAATgtatactacc ... tgatttgcagAAACAGAGGGAGCAGAAAGACAGCCTCGTAGATGAAGAAAAATTGGCTTCG