1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GAAGCAGTTACAATACCGTGGAGAGCACTTCCCAAAAAAGTCACAAAGCTATACTTAGCTATGAGAGgtgtgggaaaattacacagattttttttttcctttgaaaggacgaagaataaaaaacatggcggttaacaggaaaatagtttacctactttggtttttca...
species | Vitis vinifera |
transcript | Vv17s0000g01270.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTGGAGAGCACTTCCCAAAAAAGTCACAAAGCTATACTTAGCTATGAGAG TAATTGAAAGGTTTGAAGAAGCTGAGGGTCGGAATCCAGGAGAAATTTCAAEST: gi|110389300|gb|EC954126.1|EC954126
genomic: GTGGAGAGCACTTCCCAAAAAAGTCACAAAGCTATACTTAGCTATGAGAGgtgtgggaaa ... atttttgcagTAATTGAGAGGTTTGAAGAAGCTGAGGGTCGGAATCCAGGAGAAATTTCAA
EST: AAAAAGTCACAAAGCTATACTTAGCTATGAGAG TAATTGAGAGGTTTGAAGAAGCTGAGGGTCGGAATCCAGGAGAAATTTCAAEST: gi|351053900|gb|FQ441666.1|FQ441666
genomic: AAAAAGTCACAAAGCTATACTTAGCTATGAGAGgtgtgggaaa ... atttttgcagTAATTGAGAGGTTTGAAGAAGCTGAGGGTCGGAATCCAGGAGAAATTTCAA
EST: GTGGAGAGCACTTCCCAAAAAAGTCACAAAGCTATACTTAGCTATGAGAG TAATTGAGAGGTTTGAAGAAGCTGAGGGTCGGAATCCAGGAGAAATTTCAAEST: gi|110421721|gb|EC988021.1|EC988021
genomic: GTGGAGAGCACTTCCCAAAAAAGTCACAAAGCTATACTTAGCTATGAGAGgtgtgggaaa ... atttttgcagTAATTGAGAGGTTTGAAGAAGCTGAGGGTCGGAATCCAGGAGAAATTTCAA
EST: GTGGAGAGCACTTCCCAAAAAAGTCACAAAGCTATACTTAGCTATGAGAG TAATTGAAAGGTTTGAAGAAGCTGAGGGTCGGAATCCAGGAGAAATTTCAAEST: gi|351035749|gb|FQ463594.1|FQ463594
genomic: GTGGAGAGCACTTCCCAAAAAAGTCACAAAGCTATACTTAGCTATGAGAGgtgtgggaaa ... atttttgcagTAATTGAGAGGTTTGAAGAAGCTGAGGGTCGGAATCCAGGAGAAATTTCAA
EST: GTGGAGAGCACTTCCCAAAAAAGTCACAAAGCTATACTTAGCTATGAGAG TAATTGAGAGGTTTEST: gi|110424420|gb|EC990781.1|EC990781
genomic: GTGGAGAGCACTTCCCAAAAAAGTCACAAAGCTATACTTAGCTATGAGAGgtgtgggaaa ... atttttgcagTAATTGAGAGGTTT
EST: GTGGAGAGCACTTCCCAAAAAAGTCACAAAGCTATACTTAGCTATGAGAG TAATTGAAAGGTTTGAAGAAGCTGAGGGTCGGAATCCAGGAGAAATTTCAA
genomic: GTGGAGAGCACTTCCCAAAAAAGTCACAAAGCTATACTTAGCTATGAGAGgtgtgggaaa ... atttttgcagTAATTGAGAGGTTTGAAGAAGCTGAGGGTCGGAATCCAGGAGAAATTTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGCAGTTACAATACCGTGGAGAGCACTTCCCAAAAAAGTCACAAAGCTATACTTAGCTATGAGAGgtgtgggaaaattacacagattttttttttcctttgaaaggacgaagaataaaaaacatggcggttaacaggaaaatagtttacctactttggtttttca
- - - - - - - - GTGGAG
- - - - - - - - - TGGAGA
- - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaagga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaata