Sequence
atgc intronic sequence ATGC exonic sequenceGCAATGGTTGCTAGAGGGGATCTTGGTGCCGAGCTTCCTATTGAGGAGGTCCCATTGCTACAGgtaatttctttgtttctgattgaagagatgatagagataatagggtcttccagaagtgcctttcatgttttataacaagcatctacttgagtatttaccaacatttcaaactgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0050g02180.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA10G37210.1 (Glycine max), 5'ss of exon 7
GCAATGGTTGCTAGAGGGGATCTTGGTGCCGAGCTTCCTATTGAGGAGGTCCCATTGCTACAGgtaatttctttgtttctgattgaagagatgatagagataatagggtcttccagaagtgcctttcatgttttataacaagcatctacttgagtatttaccaacatttcaaactgcag
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GCCATGGTTGCAAGAGGAGATCTTGGTGCAGAGCTCCCTATTGAAGAGGTTCCACTTTTGCAGgtaaagtcctt---ttaaac---agaaatgagattaatggtaaagataattatcagttggtattgcttcgtaacataaaaaaatgcttgctaatgtag------------------
upper sequence: Vv16s0050g02180.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA16G28980.1 (Glycine max), 5'ss of exon 7
GCAATGGTTGCTAGAGGGGATCTTGGTGCCGAGCTTCCTATTGAGGAGGTCCCATTGCTACAGgtaa-tttctttgtttctgattgaagagatgatagagataatagggtcttccagaagtgcctttcatgttttataacaagcatctacttgagtatttaccaacatttcaa--actgcag------
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GCAATGGTTGCCAGAGGAGATCTTGGCGCTGAGCTCCCTATTGAAGAGGTTCCACTTTTGCAGgtaaacttctttacctctga--aaatctgtagtaaaaataatta-----tcaattggtatcatttatgttgctggatggatgtcatgttgagctcatcttaacatcgtaatggctgttattgtag
upper sequence: Vv16s0050g02180.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT5G52920.1 (Arabidopsis thaliana), 5'ss of exon 7
GCAATGGTTGCTAGAGGGGATCTTGGTGCCGAGCTTCCTATTGAGGAGGTCCCATTGCTACAGgtaatttctttgtttctgattgaagagatgatagagataatagggtcttccagaagtgcctttcatgttttataacaagcatctacttgagtatttaccaacatttcaaactgcag
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GCAATGGTTGCAAGAGGTGATCTTGGTGCAGAGCTTCCAATTGAAGAAGTCCCCATTCTTCAGgttagtactt-gcctctcatttttaagataacccagagaaggagattt---agaact--tgttgaagttgaaactcttgattttaatttgttatacag------------------
upper sequence: Vv16s0050g02180.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: EFJ08413 (Selaginella moellendorffii), 5'ss of exon 6
GCAATGGTTGCTAGAGGGGATCTTGGTGCCGAGCTTCCTATTGAGGAGGTCCCATTGCTACAGgtaatttctttgtttctgattgaagagatgatagagataatagggtcttccagaagtgcctttcatgttttataacaagcatctacttgagtatttaccaacatttcaaactgcag
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GCTATGGTTGCTAGAGGAGATCTTGGTGCCGAGCTTCCTATTGAAGACGTGCCCCTCCTTCAGgttcgttctcgctctct-----agaaacttaatgtgattcaag-------------------------------------------------------------------------
upper sequence: Vv16s0050g02180.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: EFJ15169 (Selaginella moellendorffii), 5'ss of exon 5
GCAATGGTTGCTAGAGGGGATCTTGGTGCCGAGCTTCCTATTGAGGAGGTCCCATTGCTACAGgtaatttctttgtttctgattgaagagatgatagagataatagggtcttccagaagtgcctttcatgttttataacaagcatctacttgagtatttaccaacatttcaaactgcag
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GCTATGGTTGCTAGAGGAGATCTTGGTGCCGAGCTTCCTATTGAAGACGTTCCCCTCCTTCAGgttggttctcgctctct--------agaaacttaatgtgattcaagcttcc----gttttccgcttggttcg-agcag--------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110698146|gb|EE075377.1|EE075377EST: GAGGGGATCTTGGTGCCGAGCTTCCTATTGAGGAGGTCCCATTGCTACAG GAAGAGATAATCAGGATATGTCGTAGCATGGGAAAAGCTGTTATTGTAGCA
genomic: GAGGGGATCTTGGTGCCGAGCTTCCTATTGAGGAGGTCCCATTGCTACAGgtaatttctt ... caaactgcagGAAGAGATAATCAGGATATGTCGTAGCATGGGAAAAGCTGTTATTGTAGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCAATGGTTGCTAGAGGGGATCTTGGTGCCGAGCTTCCTATTGAGGAGGTCCCATTGCTACAGgtaatttctttgtttctgattgaagagatgatagagataatagggtcttccagaagtgcctttcatgttttataacaagcatctacttgagtatttaccaacatttcaaactgcag
- - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - GAGGAG