1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TTGAAGGATCTCCAAGTTTTCACTGTTGCTCGTGTTATCTTCCAACTTGCAGAAGAGATACCTTGTATTTCTGCTGTTATTGTTGCTCTACTTTCTGAGgtacatcttacgaaaaatgcttaagtgcttgaaatttttttgcaattcaacccagttgttgtcataatcttaactgtggtatacatatcatatatctttc...
species | Vitis vinifera |
transcript | Vv15s0048g01410.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CAGAAGAGATACCTTGTATTTCTGCTGTTATTGTTGCTCTACTTTCTGAG CCAAAGCCAAGAATTGATTATACTCTGAAGGCTGTTGGTGGAAGTTTAACAEST: gi|110729808|gb|EE106164.1|EE106164
genomic: CAGAAGAGATACCTTGTATTTCTGCTGTTATTGTTGCTCTACTTTCTGAGgtacatctta ... gttcaatcagCCAAAGCCAAGAATTGATTATACTCTGAAGGCTGTTGGTGGAAGTTTAACA
EST: CAGAAGAGATACCTTGTATTTCTGCTGTTATTGTTGCTCTACTTTCTGAG CCAA-GCCAAGAATTGATTATACTCTGAAGGCTGTTGGTGGAAGTTTA-CAEST: gi|56408047|gb|CX016299.1|CX016299
genomic: CAGAAGAGATACCTTGTATTTCTGCTGTTATTGTTGCTCTACTTTCTGAGgtacatctta ... gttcaatcagCCAAAGCCAAGAATTGATTATACTCTGAAGGCTGTTGGTGGAAGTTTAACA
EST: CAGAAGAGATACCTTGTATTTCTGCTGTTATTGTTGCTCCACTTTCTGAG CCAAAGCCAAGAATTGATTATACTCTGAAGGCTGTTGGTGGAAGTTTAACA
genomic: CAGAAGAGATACCTTGTATTTCTGCTGTTATTGTTGCTCTACTTTCTGAGgtacatctta ... gttcaatcagCCAAAGCCAAGAATTGATTATACTCTGAAGGCTGTTGGTGGAAGTTTAACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGAAGGATCTCCAAGTTTTCACTGTTGCTCGTGTTATCTTCCAACTTGCAGAAGAGATACCTTGTATTTCTGCTGTTATTGTTGCTCTACTTTCTGAGgtacatcttacgaaaaatgcttaagtgcttgaaatttttttgcaattcaacccagttgttgtcataatcttaactgtggtatacatatcatatatctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaat