Sequence
atgc intronic sequence ATGC exonic sequenceCAAGACAGCAAAATGGCTTGGTCTTGACTTGAGGAGGAGTGGTGGTCCAGCTATAGAAGAGCTTGCCAGAGAGGGTGATGCAAAAGCAGTCAAATTTTCAgtaagttgtttcccaaggtttcactcttctcattatagccacctttacctcaattgtatgtatgggtcccatctaaaaggtctaggtgataatatgattattttgcactttactgagttctttgttgttttgattcttag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0048g00390.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA01G33720.1 (Glycine max), 5'ss of exon 8
CAAGACAGCAAAATGGCTTGGTCTTGACTTGAGGAGGAGTGGTGGTCCAGCTATAGAAGAGCTTGCCAGAGAGGGTGATGCAAAAGCAGTCAAATTTTCAgtaagtt-gtttcccaaggtttcactcttctcattatagccacctttacctcaattgtatgtatgggtc--ccatctaaaaggtctaggtgataatatgat---tattttgcactttactgagttct----ttgttgttttgat-tcttag
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CAAGACAGCAAAATGGCTTGGACTTGATTTGAGGAGAAGTGGTGGTCCTGCTATTGAGAAGCTTGCTATGGAGGGTAATGCTGAATCAGTCAAGTTTTCTgtaagttagctgcacaatattatattcctctccctttccctagcttg----tgattgttgccttaggttggatatctatccttttctggcattgctatggcagatgttgtgcttctagtggagatttaagtttattaccttgtcattctag
upper sequence: Vv15s0048g00390.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA03G03250.1 (Glycine max), 5'ss of exon 7
CAAGACAGCAAAATGGCTTGGTCTTGACTTGAGGAGGAGTGGTGGTCCAGCTATAGAAGAGCTTGCCAGAGAGGGTGATGCAAAAGCAGTCAAATTTTCAgtaagtt-gtttcccaaggtttcactcttctcatta----tagcc----acctttacctcaa-ttgtatgtatgggtcccatctaaaaggtc-taggtgataatatgattattttgcactttactgagttctttgttgttttgattcttag
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CAAGACAGCAAAATGGCTCGGACTGGATTTGAGGAGAAGTGGTGGTCCTGCTATTGAGAAGCTTGCTATGGAGGGTAATGCTGAATCAGTCAAGTTTTCTgtaagttagctgcacaatattatattcctctcccttcccctagcccgtgattgttgccttaggttgaatatctatccttttctgacattgccatggcagatgttgtgcttctagtggagatt--taagtttattacc-ttgtcattctag-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71867429|gb|DT016484.1|DT016484EST: CTATAGAAGAGCTTGCCAGAGAGGGTGATGCAAAAGCAGTCAAATTTTCA ACCCCAATGAAACAACATAAGGATTGTAACTTCTCGTACGCTGGTTTGAAG
genomic: CTATAGAAGAGCTTGCCAGAGAGGGTGATGCAAAAGCAGTCAAATTTTCAgtaagttgtt ... tgattcttagACCCCAATGAAACAACATAAGGATTGTAACTTCTCGTACGCTGGTTTGAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAAGACAGCAAAATGGCTTGGTCTTGACTTGAGGAGGAGTGGTGGTCCAGCTATAGAAGAGCTTGCCAGAGAGGGTGATGCAAAAGCAGTCAAATTTTCAgtaagttgtttcccaaggtttcactcttctcattatagccacctttacctcaattgtatgtatgggtcccatctaaaaggtctaggtgataatatgattattttgcactttactgagttctttgttgttttgattcttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG