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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGATGAGGAGATTCTTCAGGAAGTGGTTAAGATGGGATTTGACAGGAATCTACTTGTTGAATCTCTTCGCAACAGAGTACAAAATGATgtataccattcctgacccttcaaactccttgtgtcttttctatcctccagatcccaaaaaaaaaaaaaaaacttattataattttccaattctgctttctgagttcttgcaaaatatttcag

Basic information

species Vitis vinifera
transcript Vv14s0108g01230.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0108g01230.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA13G05700.1 (Glycine max), 5'ss of exon 7
ATTGATGAGGAGATTCTTCAGGAAGTGGTTAAGATGGGATTTGACAGGAATCTACTTGTTGAATCTCTTCGCAACAGAGTACAAAATGATgtataccattcctgacccttcaaactccttgtgtcttttctatcctccagatcccaaaaaaaaaaaaaaaacttattataattttccaattctgctttctgagttcttgcaaaatatttcag
|||||||||||||||||||||||||||||||| ||||||||||||||||||| | | |||||||||||| |||||||  |||||||||| || |   ||   | |   ||||       |||  ||     ||  ||   ||| ||        |    |                                                    
ATTGATGAGGAGATTCTTCAGGAAGTGGTTAATATGGGATTTGACAGGAATCAATTGGTTGAATCTCTTAGCAACAGGATACAAAATGAGgtttgtgatcttttatt-ttcacctcaagtgtacctgccagattgtctc-atctcactgtctgtatttcag---------------------------------------------------

upper sequence: Vv14s0108g01230.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA18G49770.1 (Glycine max), 5'ss of exon 8
ATTGATGAGGAGATTCTTCAGGAAGTGGTTAAGATGGGATTTGACAGGAATCTACTTGTTGAATCTCTTCGCAACAGAGTACAAAATGATgtataccattcctgacccttcaaactccttgtgtcttttctatcctccagatcccaaaaaaaaaaaaaaaacttattataattttccaattctgctttctgagttcttgcaaaatatttcag
|||||||||||||| |||||||||||||| || ||||||||||||||||||| | | |||||||||||| | |||||  |||||||||| ||          ||  ||||  |     |||| | || | ||||  ||||||        |  |  |   |  ||||  |                                          
ATTGATGAGGAGATCCTTCAGGAAGTGGTGAAAATGGGATTTGACAGGAATCAATTGGTTGAATCTCTTGGGAACAGGATACAAAATGAGgt---------ttgtgcctttga---ttttgtct-ttctatatctgccagataatcccttactaccatccatatatttcag-----------------------------------------

upper sequence: Vv14s0108g01230.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA08G26180.1 (Glycine max), 5'ss of exon 7
ATTGATGAGGAGATTCTTCAGGAAGTGGTTAAGATGGGATTTGACAGGAATCTACTTGTTGAATCTCTTCGCAACAGAGTACAAAATGATgtataccattcctgacccttcaaactccttgtgtcttttctatcctccagatcccaaaaaaaaaaaaaaaacttattataattttccaattctgctttctgagttcttgcaaaatatttcag
||||| |||||||| |||||||||||||| || ||||||||||||||||||| | | |||||||||||| | |||||  |||||||||| || |     |         ||   ||   | ||||   |  ||||   |  |||    |   |    |                                                      
ATTGACGAGGAGATCCTTCAGGAAGTGGTGAAAATGGGATTTGACAGGAATCAATTGGTTGAATCTCTTGGGAACAGGATACAAAATGAGgtttgtgcctttgattttctccttctatatctgtcagataaatcccttacttccatccatgtatttcag-----------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110375190|gb|EC940152.1|EC940152
EST:     TTGACAGGAATCTACTTGTTGAATCTCTTCGCAACAGAGTACAAAATGAT                         GCTACCGTTGCATACTATTTGCTATTGGACAACCGTTTCCGTGTTTCCAGT
genomic: TTGACAGGAATCTACTTGTTGAATCTCTTCGCAACAGAGTACAAAATGATgtataccatt ... aatatttcagGCTACCGTTGCATACTATTTGCTATTGGACAACCGTTTCCGTGTTTCCAGT
EST: gi|161720814|gb|FC070953.1|FC070953
EST:     TTGACAGGAATCTACTTGTTGAATCTCTTCGCAACAGAGTACAAAATGAT                         GCTACCGTTGCATACTATTTGCTATTGGACAACCGTTTCCGTGTTTCCAGT
genomic: TTGACAGGAATCTACTTGTTGAATCTCTTCGCAACAGAGTACAAAATGATgtataccatt ... aatatttcagGCTACCGTTGCATACTATTTGCTATTGGACAACCGTTTCCGTGTTTCCAGT
EST: gi|110379945|gb|EC945172.1|EC945172
EST:     TTGACAGGAATCTACTTGTTGAATCTCTTCGCAACAGAGTACAAAATGAT                         GCTACCGTTGCATACTATTTGCTATTGGACAACCGTTTCCGTGTTTCCAGT
genomic: TTGACAGGAATCTACTTGTTGAATCTCTTCGCAACAGAGTACAAAATGATgtataccatt ... aatatttcagGCTACCGTTGCATACTATTTGCTATTGGACAACCGTTTCCGTGTTTCCAGT