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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAGACTGTATAACTAAGATGAGGTTAATGTCTCTGGTGGATCTTGGCTCTGATGAATCTTGTCAAATTCCATATTCTCTCATCAAAGACACACTTAGGgtaaaagcatctttgctctttcttactctgcttctaccaggtgtcccatctacaagttggttaaatatattggtgcaattttgtttgcag

Basic information

species Vitis vinifera
transcript Vv14s0068g00220.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0068g00220.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA20G22090.1 (Glycine max), 5'ss of exon 7
TGAAGACTGTATAACTAAGATGAGGTTAATGTCTCTGGTGGATCTTGGCTCTGATGAATCTTGTCAAATTCCATATTCTCTCATCAAAGACACACTTAGGgtaaaagcatctttgctctttcttactctgcttctaccaggtgtcccatctacaagttggttaaatatattggtgcaattttgtttgcag
|||||| || ||  | || |||||| |  ||||  ||||||||||| ||||||||| |||| | ||||||||||||   || || |  |||||||||  ||||||   || |||| | | | |   | |  ||       |||| |   |||  |      ||| |  | || ||  |  |   || |||
TGAAGAATGCATTGCCAAAATGAGGCTTTTGTCATTGGTGGATCTTAGCTCTGATGGATCTGGCCAAATTCCATATGAACTTATTAGGGACACACTTCAGgtaaatttatttttggtttctatgtttgtattt-------gtgttcttcctagca------taattgaaatgttgtgacatccctttcag

upper sequence: Vv14s0068g00220.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA10G28080.2 (Glycine max), 5'ss of exon 6
TGAAGACTGTATAACTAAGATGAGGTTAATGTCTCTGGTGGATCTTGGCTCTGATGAATCTTGTCAAATTCCATATTCTCTCATCAAAGACACACTTAGGgtaaaagcatctttgctctttcttactctgcttctaccaggtgtcccatctacaagttggttaaatatattggtgcaattttgtttgcag
|||||| || ||  | || |||||| |  ||||  ||||||||||| ||||||||| |||| | ||||||||||||   || || |  |||||||||  ||||||    | |||| | | | |   | ||| | |     |||| |   |||  |      ||| |  | || ||    ||   || |||
TGAAGAATGCATTGCCAAAATGAGGCTGTTGTCATTGGTGGATCTTAGCTCTGATGGATCTGGCCAAATTCCATATGAACTTATTAGGGACACACTTCAGgtaaatttgtttttggtgtctatg--tttgcattt-----gtgttcttcctagca------taattgaaatgttgtggcttccctt-cag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30326179|gb|CD009441.1|CD009441
EST:     CTGATGAATCTTGTCAAATTCCATATTCTCTCATCAAAGACACACTTAGG                         ATTGATGATGATGAGGTGGAACTCTGGGTGGTTAAGGCAATAACTGTGAAA
genomic: CTGATGAATCTTGTCAAATTCCATATTCTCTCATCAAAGACACACTTAGGgtaaaagcat ... ttgtttgcagATTGATGATGATGAGGTGGAACTCTGGGTGGTTAAGGCAATAACTGTGAAA
EST: gi|37187675|gb|CF607028.1|CF607028
EST:     CTGATGAATCTTGTCAAATTCCATATTCTCTCATCAAAGACACACTTAGG                         ATTGATGATGATGAGGTGGAACTCTGGGTGGTTAAGGCAATAACTGTGAAA
genomic: CTGATGAATCTTGTCAAATTCCATATTCTCTCATCAAAGACACACTTAGGgtaaaagcat ... ttgtttgcagATTGATGATGATGAGGTGGAACTCTGGGTGGTTAAGGCAATAACTGTGAAA
EST: gi|87586086|gb|DY474543.1|DY474543
EST:     CTGATGAATCTTGTCAAATTCCATATTCTCTCATCAAAGACACACTTAGG                         ATTGATGATGATGAGGTGGAACTCTGGGTGGTTAAGGCAATAACTGTGAAA
genomic: CTGATGAATCTTGTCAAATTCCATATTCTCTCATCAAAGACACACTTAGGgtaaaagcat ... ttgtttgcagATTGATGATGATGAGGTGGAACTCTGGGTGGTTAAGGCAATAACTGTGAAA
EST: gi|110421499|gb|EC987796.1|EC987796
EST:     CTGATGAATCTTGTCAAATTCCATATTCTCTCATCAAAGACACACTTAGG                         ATTGATGATGATGAGGTGGAACTCTGGGTGGTTAAGGCAATAACTGTGAAA
genomic: CTGATGAATCTTGTCAAATTCCATATTCTCTCATCAAAGACACACTTAGGgtaaaagcat ... ttgtttgcagATTGATGATGATGAGGTGGAACTCTGGGTGGTTAAGGCAATAACTGTGAAA