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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTGATGTATCCGGTGGGCGCACCCTTAGGAATCTCTTCAGTGGTGTAGTTAACTTGCAGgtagtgtaatgatcttaaatttttggagcccttccattatggaaatccattatctcttgcttatatagaacgtgtctaatcttcagttgggttaaccttt...

Basic information

species Vitis vinifera
transcript Vv14s0060g00230.t01
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32271244|gb|CD720403.1|CD720403
EST:     CCGGTGGGCGCACCCTTAGGAATCTCTTCAGTGGTGTAGTTAACTTGCAG                         GGGGTGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACC
genomic: CCGGTGGGCGCACCCTTAGGAATCTCTTCAGTGGTGTAGTTAACTTGCAGgtagtgtaat ... ataattgcagGGGGTGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACC
EST: gi|110415561|gb|EC981480.1|EC981480
EST:     CCGGTGGGCGCACCCTTAGGAATCTCTTCAGTGGTGTAGTTAACTTGCAG                         GGGGTGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACC
genomic: CCGGTGGGCGCACCCTTAGGAATCTCTTCAGTGGTGTAGTTAACTTGCAGgtagtgtaat ... ataattgcagGGGGTGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACC
EST: gi|110363756|gb|EC927367.1|EC927367
EST:     CCGGTGGGCGCACCCTTAGGAATCTCTTCAGTGGTGTAGTTAACTTGCAG                         GGGGTGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACC
genomic: CCGGTGGGCGCACCCTTAGGAATCTCTTCAGTGGTGTAGTTAACTTGCAGgtagtgtaat ... ataattgcagGGGGTGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACC
EST: gi|110373337|gb|EC937563.1|EC937563
EST:     CCGGTGGGCGCACCCTTAGGAATCTCTTCAGTGGTGTAGTTAACTTGCAG                         GGGGTGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACC
genomic: CCGGTGGGCGCACCCTTAGGAATCTCTTCAGTGGTGTAGTTAACTTGCAGgtagtgtaat ... ataattgcagGGGGTGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACC
EST: gi|18458238|gb|BM436516.1|BM436516
EST:     CCGGTGGGCGCACCCTTAGGAATCTCTTCAGTGGTGTAGTTAACTTGCAG                         GGGGTGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACC
genomic: CCGGTGGGCGCACCCTTAGGAATCTCTTCAGTGGTGTAGTTAACTTGCAGgtagtgtaat ... ataattgcagGGGGTGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACC
EST: gi|110363559|gb|EC927156.1|EC927156
EST:     TGTAGTTAACTTGCAG                         GGGGTGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACC
genomic: TGTAGTTAACTTGCAGgtagtgtaat ... ataattgcagGGGGTGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACC
EST: gi|30327012|gb|CD010274.1|CD010274
EST:     CCGGTGGGCGCACCCTTAGGAATCTCTTCAGTGGTGTAGTTAACTTGCAG                         GGGGTGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACC
genomic: CCGGTGGGCGCACCCTTAGGAATCTCTTCAGTGGTGTAGTTAACTTGCAGgtagtgtaat ... ataattgcagGGGGTGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACC
EST: gi|30327090|gb|CD010352.1|CD010352
EST:     CCGGTGGGCGCACCCTTAGGAATCTCTTCAGTGGTGTAGTTAACTTGCAG                         GGGGTGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACC
genomic: CCGGTGGGCGCACCCTTAGGAATCTCTTCAGTGGTGTAGTTAACTTGCAGgtagtgtaat ... ataattgcagGGGGTGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACC
EST: gi|110397107|gb|EC962828.1|EC962828
EST:     CCGGTGGGCGCACCCTTAGGAATCTCTTCAGTGGTGTAGTTAACTTGCAG                         GGGGTGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACC
genomic: CCGGTGGGCGCACCCTTAGGAATCTCTTCAGTGGTGTAGTTAACTTGCAGgtagtgtaat ... ataattgcagGGGGTGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACC
EST: gi|110422538|gb|EC988864.1|EC988864
EST:     CCGGTGGGCGCACCCTTAGGAATCTCTTCAGTGGTGTAGTTAACTTGCAG                         GGGGTGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACC
genomic: CCGGTGGGCGCACCCTTAGGAATCTCTTCAGTGGTGTAGTTAACTTGCAGgtagtgtaat ... ataattgcagGGGGTGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACC
EST: gi|30321442|gb|CD004704.1|CD004704
EST:     CCGGTGGGCGCACCCTTAGGAATCTCTTCAGTGGTGTAGTTAACTTGCAG                         GGGGTGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACC
genomic: CCGGTGGGCGCACCCTTAGGAATCTCTTCAGTGGTGTAGTTAACTTGCAGgtagtgtaat ... ataattgcagGGGGTGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACC
EST: gi|110696063|gb|EE074792.1|EE074792
EST:     CCGGTGGGCGCACCCTTAGGAATCTCTTCAGTGGTGTAGTTAACTTGCAG                         GGGGTGCAAAGGAACCTGCCATCTTTTTGTTTGAATCATCTTGATCCAACC
genomic: CCGGTGGGCGCACCCTTAGGAATCTCTTCAGTGGTGTAGTTAACTTGCAGgtagtgtaat ... ataattgcagGGGGTGCAAAGGAACCTGCCATCTTTTTGTTTGAATCGTCTTGATCCAACC
EST: gi|110361606|gb|EC925092.1|EC925092
EST:     CCGGTGGGCGCACCCTTAGGAATCTCTTCAGTGGTGTAGTTAACTTGCAG                         GGGGTGCAAAGGAACCTGCCATCTTTT
genomic: CCGGTGGGCGCACCCTTAGGAATCTCTTCAGTGGTGTAGTTAACTTGCAGgtagtgtaat ... ataattgcagGGGGTGCAAAGGAACCTGCCATCTTTT
EST: gi|30326319|gb|CD009581.1|CD009581
EST:     CCGGTGGGCGCACCCTTAGGAATCTCTTCAGTGGTGTAGTTAACTTGCAG                         GGGGTGCAAAGGAACCTGCCATCTTTT
genomic: CCGGTGGGCGCACCCTTAGGAATCTCTTCAGTGGTGTAGTTAACTTGCAGgtagtgtaat ... ataattgcagGGGGTGCAAAGGAACCTGCCATCTTTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATTGATGTATCCGGTGGGCGCACCCTTAGGAATCTCTTCAGTGGTGTAGTTAACTTGCAGgtagtgtaatgatcttaaatttttggagcccttccattatggaaatccattatctcttgcttatatagaacgtgtctaatcttcagttgggttaaccttt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atggaaa