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GCACAGAGCAGCACTCAGTTGTATACTACAACCTACCTGAGGTTCAACAGGCACTTCATGTTTATACTGATAATGCACCATCTAAATGGGCAACCTGCAGgtaaagcttttttttggagaaatactcagaaaccgttaagaatattgcccccctagattgcaagataacttgaaatgaaaaaaacctagtagctcaaagg...
species | Vitis vinifera |
transcript | Vv11s0037g00740.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GCACTTCATGTTTATACTGATAATGCACCATCTAAATGGGCAACCTGCAG TGATGAGGTTTCTGCTACTTGGAAAGATTCTCCCAAGACAGTACTTGACGTEST: gi|351015461|gb|FQ447290.1|FQ447290
genomic: GCACTTCATGTTTATACTGATAATGCACCATCTAAATGGGCAACCTGCAGgtaaagcttt ... ctattatcagTGATGAGGTTTCTGCTACTTGGAAAGATTCTCCCAAGACAGTACTTGACGT
EST: GCACTTCATGTTTATACTGATAATGCACCATCTAAATGGGCAACCTGCAG TGATGAGGTTTCTGCTACTTGGAAAGATTCTCCCAAGACAGTACTTGACGTEST: gi|110419335|gb|EC985553.1|EC985553
genomic: GCACTTCATGTTTATACTGATAATGCACCATCTAAATGGGCAACCTGCAGgtaaagcttt ... ctattatcagTGATGAGGTTTCTGCTACTTGGAAAGATTCTCCCAAGACAGTACTTGACGT
EST: GCACTTCATGTTTATACTGATAATGCACCATCTAAATGGGCAACCTGCAG TGATGAGGTTTCTGCTACTTGGAAAGATTCTCCCAAGACAGTACTTGACGTEST: gi|29785466|gb|CB342476.2|CB342476
genomic: GCACTTCATGTTTATACTGATAATGCACCATCTAAATGGGCAACCTGCAGgtaaagcttt ... ctattatcagTGATGAGGTTTCTGCTACTTGGAAAGATTCTCCCAAGACAGTACTTGACGT
EST: GCACTTCATGTTTATACTGATAATGCACCATCTAAATGGGCAACCTGCAG TGATGAGGTTTCTGCTACTTGGAAAGATTCTCCCAAGACAGTACTTGACGTEST: gi|351022774|gb|FQ428683.1|FQ428683
genomic: GCACTTCATGTTTATACTGATAATGCACCATCTAAATGGGCAACCTGCAGgtaaagcttt ... ctattatcagTGATGAGGTTTCTGCTACTTGGAAAGATTCTCCCAAGACAGTACTTGACGT
EST: GCACTTCATGTTTATACTGATAATGCACCATCTAAATGGGCAACCTGCAG TGATGAGGTTTCTGCTACTTGGAAAGATTCTCCCAAGACAGTACTTGACGTEST: gi|110361863|gb|EC925365.1|EC925365
genomic: GCACTTCATGTTTATACTGATAATGCACCATCTAAATGGGCAACCTGCAGgtaaagcttt ... ctattatcagTGATGAGGTTTCTGCTACTTGGAAAGATTCTCCCAAGACAGTACTTGACGT
EST: GCACTTCATGTTTATACTGATAATGCACCATCTAAATGGGCAACCTGCAG TGATGAGGTTTCTGCTACTTGGAAAGATTCTCCCAAGACAGTACTTGACGT
genomic: GCACTTCATGTTTATACTGATAATGCACCATCTAAATGGGCAACCTGCAGgtaaagcttt ... ctattatcagTGATGAGGTTTCTGCTACTTGGAAAGATTCTCCCAAGACAGTACTTGACGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCACAGAGCAGCACTCAGTTGTATACTACAACCTACCTGAGGTTCAACAGGCACTTCATGTTTATACTGATAATGCACCATCTAAATGGGCAACCTGCAGgtaaagcttttttttggagaaatactcagaaaccgttaagaatattgcccccctagattgcaagataacttgaaatgaaaaaaacctagtagctcaaagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccccct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa