1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTTTTAATGGCTACAAATCGAATTGATATTCTTGACCAAGCCCTCCTCAGGCCAGGACGGATTGACAGGAAGATTGAGTTTCCAAATCCCAATGGGGAGgtagtatactacttttactgtgaaatcttctgcaaccttacaatacataaaaaacggttctttggtctgctttcctctttcccttgcatgttcttgtgca...
species | Vitis vinifera |
transcript | Vv09s0002g05800.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGCCAGGACGGATTGACAGGAAGATTGAGTTTCCAAATCCCAATGAGGAG TCTCGCTGGGATATTTTAAAAATACACTCGAGGAAAATGAATTTGATGCGTEST: gi|110733070|gb|EE108911.1|EE108911
genomic: GGCCAGGACGGATTGACAGGAAGATTGAGTTTCCAAATCCCAATGGGGAGgtagtatact ... aattactcagTCTCGCTGGGATATTTTAAAAATACACTCGAGGAAAATGAATTTGATGCGT
EST: GGCCAGGACGGATTGACAGGAAGATTGAGTTTCCAAATCCCAATGAGGAG TCTCGCTGGGATATTTTAAAAATACACTCGAGGAAAATGAATTTGATGCGTEST: gi|30305623|gb|CB982417.1|CB982417
genomic: GGCCAGGACGGATTGACAGGAAGATTGAGTTTCCAAATCCCAATGGGGAGgtagtatact ... aattactcagTCTCGCTGGGATATTTTAAAAATACACTCGAGGAAAATGAATTTGATGCGT
EST: GGCCAGGACGGATTGACAGGAAGATTGAGTTTCCAAATCCCAATGAGGAG TCTCGCTGGGATATTTTAAAAATACACTCGAGGAAAATGAATTTGATGCGT
genomic: GGCCAGGACGGATTGACAGGAAGATTGAGTTTCCAAATCCCAATGGGGAGgtagtatact ... aattactcagTCTCGCTGGGATATTTTAAAAATACACTCGAGGAAAATGAATTTGATGCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTTAATGGCTACAAATCGAATTGATATTCTTGACCAAGCCCTCCTCAGGCCAGGACGGATTGACAGGAAGATTGAGTTTCCAAATCCCAATGGGGAGgtagtatactacttttactgtgaaatcttctgcaaccttacaatacataaaaaacggttctttggtctgctttcctctttcccttgcatgttcttgtgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctttccc