1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTGGACAAAGCAACAGCTGACCTCAAGAATACTAATGTTAGACTTAAGGACACTGTTAACCAGgtaatttgactattttaagcttagatttccatttatcctctcctgtgctcatctgtagattactctactagatctaacaaagggttttggtattgcttcag
species | Vitis vinifera |
transcript | Vv08s0040g02130.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CAGCTGACCTCAAGAATACTAATGTTAGACTTAAGGACACTGTTAACCAG CTGAAGTCCAGTCGAAATTTCTGCATTGATATTATTTTGTTGTGTATAATTEST: gi|110724614|gb|EE100606.1|EE100606
genomic: CAGCTGACCTCAAGAATACTAATGTTAGACTTAAGGACACTGTTAACCAGgtaatttgac ... attgcttcagCTGAGGTCCAGTCGAAATTTCTGCATTGATATTATTTTGTTGTGTATAATT
EST: CAGCTGACCTCAAGAATACTAATGTTAGACTTAAGGACACTGTTAACCAG CTGAGGTCCAGTCGAAATTTCTGCATTGATATTATTTTGTTGTGTATAATT
genomic: CAGCTGACCTCAAGAATACTAATGTTAGACTTAAGGACACTGTTAACCAGgtaatttgac ... attgcttcagCTGAGGTCCAGTCGAAATTTCTGCATTGATATTATTTTGTTGTGTATAATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGACAAAGCAACAGCTGACCTCAAGAATACTAATGTTAGACTTAAGGACACTGTTAACCAGgtaatttgactattttaagcttagatttccatttatcctctcctgtgctcatctgtagattactctactagatctaacaaagggttttggtattgcttcag
- - - - - - CAGCTG
- - - - - - - AGCTGA