1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGGAACTCGCTTTACACAGGCAAAGCTTTTAGCAGCTCAAGAATATGCAACTGCATCGGGGTTGCCTGTTCCTAGAAATGTTCTGATTCCCCGTACTAAGgttaaattttcatctcatcttttgttaagacatgaaaaaaaaattcttgctaatttgtgaacttatttgctctgacttcttgtgtataaagttcttctca...
species | Vitis vinifera |
transcript | Vv08s0007g08110.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTGCATCGGGGTTGCCTGTTCCTAGAAATGTTCTGATTCCCCGTACTAAG GGTTTTGTTTCAACTGTCAGTCACATGCGTTCATTTGTTCCAGCTGTTTATEST: gi|71862495|gb|DT011550.1|DT011550
genomic: CTGCATCGGGGTTGCCTGTTCCTAGAAATGTTCTGATTCCCCGTACTAAGgttaaatttt ... ttgctatcagGGTTTTGTTTCAGCTGTCAGTCACATGCGTTCATTTGTTCCAGCTGTTTAT
EST: CTGCATCGGGGTTGCCTGTTCCTAGAAATGTTCTGATTCCCCGTACTAAG GGTTTTGTTTCAGCTGTCAGTCACATGCGTTCATTTGTTCCAGCTGTTTATEST: gi|110703094|gb|EE079637.1|EE079637
genomic: CTGCATCGGGGTTGCCTGTTCCTAGAAATGTTCTGATTCCCCGTACTAAGgttaaatttt ... ttgctatcagGGTTTTGTTTCAGCTGTCAGTCACATGCGTTCATTTGTTCCAGCTGTTTAT
EST: CTGCATCGGGGTTGCCTGTTCCTAGAAATGTTCTGATTCCCCGTACTAAG GGTTTTGTTTCAGCTGTCAGTCACATGCGTTCATTTGTTCCAGCTGTTTATEST: gi|110688154|gb|EE066378.1|EE066378
genomic: CTGCATCGGGGTTGCCTGTTCCTAGAAATGTTCTGATTCCCCGTACTAAGgttaaatttt ... ttgctatcagGGTTTTGTTTCAGCTGTCAGTCACATGCGTTCATTTGTTCCAGCTGTTTAT
EST: CTGCATCGGGGTTGCCTGTTCCTAGAAATGTTCTGATTCCCCGTACTAAG GGTTTTGTTTCAGCTGTCAGTCACATGCGTTCATTTGTTCCAGCTGTTTATEST: gi|161717359|gb|FC065274.1|FC065274
genomic: CTGCATCGGGGTTGCCTGTTCCTAGAAATGTTCTGATTCCCCGTACTAAGgttaaatttt ... ttgctatcagGGTTTTGTTTCAGCTGTCAGTCACATGCGTTCATTTGTTCCAGCTGTTTAT
EST: CTGCATCGGGGTTGCCTGTTCCTAGAAATGTTCTGATTCCC-GTACTAAG G-TTTTGTTTCAGCTGTCAGTCACATGCGTTCATTTGTTC-AGCTGTT-ATEST: gi|33405255|gb|CF210882.1|CF210882
genomic: CTGCATCGGGGTTGCCTGTTCCTAGAAATGTTCTGATTCCCCGTACTAAGgttaaatttt ... ttgctatcagGGTTTTGTTTCAGCTGTCAGTCACATGCGTTCATTTGTTCCAGCTGTTTAT
EST: TGCATCGGGGTTGCCTGTTCCTAGAAAATGTTCTGATTCCCCGTACTAAG GGTTTTTGTTTCAGCTGTCAGTCACATGCGEST: gi|110696361|gb|EE072411.1|EE072411
genomic: TGCATCGGGGTTGCCTGTTCCTAGAAA-TGTTCTGATTCCCCGTACTAAGgttaaatttt ... ttgctatcagGGTTTT-GTTTCAGCTGTCAGTCACATGCG
EST: CTGCAACGGGGTTGCCTGTTCCTAGAAATGTTCTGATTCCCCGTACTAAG GGTTTTGTTTCAGCTGTCAGTCACATGCGTTCATTTGTTCCAGCTGTTTATEST: gi|110708022|gb|EE085087.1|EE085087
genomic: CTGCATCGGGGTTGCCTGTTCCTAGAAATGTTCTGATTCCCCGTACTAAGgttaaatttt ... ttgctatcagGGTTTTGTTTCAGCTGTCAGTCACATGCGTTCATTTGTTCCAGCTGTTTAT
EST: CTGCATCGGGGTTGCCTGTTCCTAGAAATGTTCTGATTCCCCGTACTAAG GGTTTTGTTTCAGCTGTCAGTCACATGCGTTCATTTGTTCCAGCTGTTTATEST: gi|161715416|gb|FC068047.1|FC068047
genomic: CTGCATCGGGGTTGCCTGTTCCTAGAAATGTTCTGATTCCCCGTACTAAGgttaaatttt ... ttgctatcagGGTTTTGTTTCAGCTGTCAGTCACATGCGTTCATTTGTTCCAGCTGTTTAT
EST: CTGCATCGGGGTTGCCTGTTCCTAGAAATGTTCTGATTCCCCGTACTAAG GGTTTTGTTTCAGCTGTCAGTCACATGCGTTCATTTGTTCCAGCT
genomic: CTGCATCGGGGTTGCCTGTTCCTAGAAATGTTCTGATTCCCCGTACTAAGgttaaatttt ... ttgctatcagGGTTTTGTTTCAGCTGTCAGTCACATGCGTTCATTTGTTCCAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGAACTCGCTTTACACAGGCAAAGCTTTTAGCAGCTCAAGAATATGCAACTGCATCGGGGTTGCCTGTTCCTAGAAATGTTCTGATTCCCCGTACTAAGgttaaattttcatctcatcttttgttaagacatgaaaaaaaaattcttgctaatttgtgaacttatttgctctgacttcttgtgtataaagttcttctca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa