Sequence
atgc intronic sequence ATGC exonic sequenceGTTCTTTTGGGACTGTTCATCGTGCTGATTGGAATGGATCGgtaagcaatatatcctgtgtttatgctattatcatattatgattccaaggccattgatatgagaatggttgcagccccttttgttaggtagttcttgata...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g03910.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os09g39320.1 (Oryza sativa), 5'ss of exon 8
GTTCTTTTGGGACTGTTCATCGTGCTGATTGGAATGGATCGgtaagcaat--atatcctgtgtttat--gctattatcatattatgattccaaggccattgatatgagaatggttgcagccccttttgttaggtagtt----cttgata--------------------------
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GTTCATTTGGAACAGTTCATCGTGCTGACTGGAATGGATCGgtatgccttttgcatgttttatttattgataatcctcactgaactcttaatggttcagtgttttta-actgaatg-agccctttgtgctgaatgttttggactcaatattggaatgaactttgtattaccatag
upper sequence: Vv08s0007g03910.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA10G07610.1 (Glycine max), 5'ss of exon 9
GTTCTTTTGGGACTGTTCATCGTGCTGATTGGAATGGATCGgtaagcaatatatcctgtgtttatgctattatcatattatgattccaaggccattgatatgagaatggttgcagccccttttgttaggtagttcttgata---
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GTTCTTTTGGAACTGTACATCGTGCTGAGTGGAATGGCTCGgtaagcca-atctctctctcttaaattgatgctgtataaatcggtca-gcttatggttgtttgaattgtttctgttaaattt-ttagacaatgaataaaaaag
upper sequence: Vv08s0007g03910.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA13G21480.1 (Glycine max), 5'ss of exon 7
GTTCTTTTGGGACTGTTCATCGTGCTGATTGGAATGGATCGgtaagc-aatatatcctgtgtttatgctattatcatattatgattccaaggccattgatatgagaatggttgcagccccttttg--ttaggtagttcttgata
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GTTCTTTTGGAACTGTACATCGTGCTGAGTGGAATGGCTCGgtaagccaatctctcttaaattgatgctgtataaatgttactcctaacatagtattattatcctaataggcccagctcaatgcacatctagtagtacaag---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161707075|gb|FC055952.1|FC055952EST: GTTCTTTTGGGACTGTTCATCGTGCTGATTGGAATGGATCG GATGTTGCTGTAAAGGTTCTAATGGAACAAGATTTCCATGCAGAACGTTTC
genomic: GTTCTTTTGGGACTGTTCATCGTGCTGATTGGAATGGATCGgtaagcaata ... ttgcttccagGATGTTGCTGTAAAGGTTCTAATGGAACAAGATTTCCATGCAGAACGTTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTCTTTTGGGACTGTTCATCGTGCTGATTGGAATGGATCGgtaagcaatatatcctgtgtttatgctattatcatattatgattccaaggccattgatatgagaatggttgcagccccttttgttaggtagttcttgata
- - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgagaa