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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACAGAGGGTTATTGGAGAGCCAGTAGTTTCTGGGTTAGTCCTTGATGATTCTGGGCTCTGGGATCCTGACTTCATCAACGCAGCAAAgcaagatctcatactccttccattttcttcttctcttcactttctatcacattttttaacctttgtcaacattatgatcttttcatgtttcag

Basic information

species Vitis vinifera
transcript Vv06s0009g02790.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0009g02790.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os01g59340.1 (Oryza sativa), 5'ss of exon 10
GACAGAGGGTTATTGGAGAGCCAGTAGTTTCTGGGTTAGTCCTTGATGATTCTGGGCTCTGGGATCCTGACTTCATCAACGCAGCAAAgcaagatctcatactccttccattttcttcttctcttcactttctatcacattttttaacctttgtcaacattatgatcttttcatgtttcag
| ||||| || ||||| || || || ||||||||| |||| |||||||||||| |||| |||||||| |||||||| |  ||  ||||| ||        ||   ||  ||   |||  | | | || ||    |    | ||||| |   | |||   || |                  
GGCAGAGAGTCATTGGTGAACCTGTGGTTTCTGGGCTAGTACTTGATGATTCTTGGCTTTGGGATCCGGACTTCATGATAGCTTCAAAgtaaataaaagcacaaatttaatg--ctttgtttatgcaattgtggtt---tcttttatctcatatcacatttctag----------------

upper sequence: Vv06s0009g02790.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G020002_T03 (Zea mays), 5'ss of exon 7
GACAGAGGGTTATTGGAGAGCCAGTAGTTTCTGGGTTAGTCCTTGATGATTCTGGGCTCTGGGATCCTGACTTCATCAACGCAGCAAAgcaagatctcatactccttccattttcttcttctcttcactttctatcacattttttaacctttgtcaacattatgatcttttcatgtttcag
| ||||| || || || || || || ||||||||  |||| |||||||||||| |||| ||||||||||||||||  |  ||  ||||| || ||   | |     ||  |  |  |  | |    | | |  || |   ||| ||         |   || |                  
GGCAGAGAGTCATCGGTGAACCTGTGGTTTCTGGACTAGTGCTTGATGATTCTTGGCTTTGGGATCCTGACTTCACGATTGCTTCAAAgtaa-atgggaaaacaactcagtagtaatgcttttcgaattataaatta---tttctatttcacacgatgcttctag----------------

upper sequence: Vv06s0009g02790.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA08G18920.1 (Glycine max), 5'ss of exon 8
GACAGAGGGTTATTGGAGAGCCAGTAGTTTCTGGGTTAGTCCTTGATGATTCTGGGCTCTGGGATCCTGACTTCATCAACGCAGCAAAgcaagatctcatactccttccattttcttcttctcttcactttctatcacattttttaacctttgtcaacat----tatgatc-ttttcatgtttcag
|||| ||||| |||||||||||||| |  |||||||||| ||||||||| ||| |||| ||| ||||||||||    |  || ||||||  ||  | |  |||  |  |||| | || |  | ||    || |||    ||| || |  |||   || ||     ||| || || |||||||||||
GACAAAGGGTAATTGGAGAGCCAGTTGCCTCTGGGTTAGCCCTTGATGAATCTTGGCTTTGGCATCCTGACTTTGAGACTGCTGCAAAgttagtgccctcacttgtgtcattgttttttgttgttattcttttat----tttcttcagttttaagaatataagccatgttcattctcatgtttcag

upper sequence: Vv06s0009g02790.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA15G06100.1 (Glycine max), 5'ss of exon 7
GACAGAGGGTTATTGGAGAGCCAGTAGTTTCTGGGTTAGTCCTTGATGATTCTGGGCTCTGGGATCCTGACTTCATCAACGCAGCAAAgcaagatctcatactccttccattttcttcttctcttcactttctatcacattttttaacctttgtca---acattatgatc-ttttcatgtttcag
|||| ||||| ||||||||||| || |  |||||||||| ||||||||| ||| |||| ||| ||||||||||    |  || ||||||  ||  |    |||  || |||| | || || |  | |  |||| | |   | || |   ||    |   |     || || || |||||||||||
GACAAAGGGTAATTGGAGAGCCCGTTGCCTCTGGGTTAGCCCTTGATGAATCTTGGCTTTGGCATCCTGACTTTGAGACTGCTGCAAAgttagtgccttcacttgtttcattgtttttttgttgtta--ttcttttattgtcttcagttttaagaatataagccgtgttcattctcatgtttcag

upper sequence: Vv06s0009g02790.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA14G04030.1 (Glycine max), 5'ss of exon 7
GACAGAGGGTTATTGGAGAGCCAGTAGTTTCTGGGTTAGTCCTTGATGATTCTGGGCTCTGGGATCCTGACTTCATCAACGCAGCAAAgcaagatctcatactccttcca----ttttcttcttctcttcactttctatcac-attttttaacctttgtcaacattatgatc----------------ttttcatgtttcag
|||| ||||| |||||||||||  | |  |||||||||| ||||||||| ||| |||| ||| ||||||||||    |  |||||||||||||  |    |||  || ||    |||| ||  | | ||   ||| |||     || ||| |      | ||  ||| || |                || |||||||||||
GACAAAGGGTAATTGGAGAGCCTATTGCCTCTGGGTTAGCCCTTGATGAATCTTGGCTTTGGCATCCTGACTTTGAGATTGCAGCAAAgcaagtgccttcacttgtttcaatgtttttatttattttttatttttttattgttgttcttttattgccttaaattttaagaacatataagccttattcattctcatgtttcag

upper sequence: Vv06s0009g02790.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT5G12200.1 (Arabidopsis thaliana), 5'ss of exon 7
GACAGAGGGTTATTGGAGAGCCAGTAGTTTCTGGGTTAGTCCTTGATGATTCTGGGCTCTGGGATCCTGACTTCATCAACGCAGCAAAgcaagatctcatactccttccattttcttcttctcttcactttctatcacattttttaacctttgtcaacattatgatcttttcatgtttcag
|||||| ||||||||||||||| || || ||||| ||| |||||||||||  | |||| ||||||||||||||||  |  ||  | ||| || |      | ||||||  || | ||  ||   | | || | ||   ||| ||| |  ||| ||||  ||    | | |  || ||||||
GACAGAAGGTTATTGGAGAGCCTGTTGTGTCTGGATTAATCCTTGATGATCATTGGCTTTGGGATCCTGACTTCACAATTGCGTCCAAgtaata------aatccttcagttctgttaatcaaatga-ttcccatt-tattctttcagattt-tcaaagtt----tttctcaatatttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30137635|gb|CB922973.1|CB922973
EST:     GTCCTTGATGATTCTGGGCTCTGGGATCCTGACTTCATCAACGCAGCAAA                         GTATGTAATGAGTCCCCCTATTAGAGCATTGGGACATGACAAGGCCCTTCA
genomic: GTCCTTGATGATTCTGGGCTCTGGGATCCTGACTTCATCAACGCAGCAAAgcaagatctc ... catgtttcagGTATGTAATGAGTCCCCCTATTAGAGCATTGGGACATGACAAGGCCCTTCA
EST: gi|30131395|gb|CB916734.1|CB916734
EST:     GTCCTTGATGATTCTGGGCTCTGGGATCCTGACTTCATCAACGCAGCAAA                         GTATGTAATGAGTCCCCCTATTAGAGCATTGGGACATGACAAGGCCCTTCA
genomic: GTCCTTGATGATTCTGGGCTCTGGGATCCTGACTTCATCAACGCAGCAAAgcaagatctc ... catgtttcagGTATGTAATGAGTCCCCCTATTAGAGCATTGGGACATGACAAGGCCCTTCA
EST: gi|30295952|gb|CB972746.1|CB972746
EST:     GTCCTTGATGATTCTGGGCTCTGGGATCCTGACTTCATCAACGCAGCAAA                         GTATGTAATGAGTCCCCCTATTAGAGCATTGGGACATGACAAGGCCCTTCA
genomic: GTCCTTGATGATTCTGGGCTCTGGGATCCTGACTTCATCAACGCAGCAAAgcaagatctc ... catgtttcagGTATGTAATGAGTCCCCCTATTAGAGCATTGGGACATGACAAGGCCCTTCA