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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGACATTGTATAATGAATTGGAAGTTGTTGAGGGGATGAAGCTGGATAGAGGTTACATATCCCCTTATTTTATAACAAACCAGAAAACCCAAAAATGTgtaagtttttttttccttgtgactcgtttgattgacatatgtctggatgctgttacttcataattgaagtaatatgaaagaagcttatgtttcagtcactagctggtttaagtaacatcaacttgttcacttaaaactgagtgtccatatctatatactacag

Basic information

species Vitis vinifera
transcript Vv05s0051g00340.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0051g00340.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT3G23990.1 (Arabidopsis thaliana), 5'ss of exon 5
GAAGACATTGTATAATGAATTGGAAGTTGTTGAGGGGATGAAGCTGGATAGAGGTTACATATCCCCTTATTTTATAACAAACCAGAAAACCCAAAAATGTgtaagtttttttttccttgtgactcgtttgattgacatatgtctggatgctgttacttca-taattgaagtaatatgaaagaagcttatgt-ttcagtcactagctggtttaagtaacatcaacttgttcacttaaaactgagtgtccatatctatatactacag
 |||||||||| ||| || ||||||||||| |||||||||||  |||| |||||||| |  || || || ||||| || || || ||||||||||||||||||||||||||  ||| ||   |||  || |        | ||| |||| ||| |  ||| | || ||||| |    |  | |  | || | |  ||                                                                    
AAAGACATTGTTTAACGAGTTGGAAGTTGTAGAGGGGATGAAATTGGACAGAGGTTATACTTCACCATACTTTATCACTAATCAAAAAACCCAAAAATGTgtaagttttttactccctg---ctcaattaa-------gtttcttgatg-tgtcatatcaattatagaagttactgaattggaattaatctatgtag--------------------------------------------------------------------

upper sequence: Vv05s0051g00340.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT2G33210.1 (Arabidopsis thaliana), 5'ss of exon 6
GAAGACATTGTATAATGAATTGGAAGTTGTTGAGGGGATGAAGCTGGATAGAGGTTACATATCCCCTTATTTTATAACAAACCAGAAAACCCAAAAATGTgtaagtttttttttccttgtgactcgtttgattgacatatgtctggatgctgttacttcataattgaagtaatatgaaagaagcttatgtttcagtcactagctggtttaagtaacatcaacttgttcacttaaaactgagtgtccatatctatatactacag
 ||||| |||| ||||||  |||||||||||||||| |||||| | || || || ||||| ||||| || || ||||| |||| |||||| ||||||||||||||  ||     |||||| |||   |  ||| |   |  |  ||||    ||   || | | ||||    | |   ||                                                                                   
CAAGACCTTGTTTAATGAGCTGGAAGTTGTTGAGGGTATGAAGATTGACAGGGGATACATCTCCCCGTACTTCATAACTAACCCGAAAACACAAAAATGTgtaaggattccca-ccttgttactttatcaatttaaggaattgcggatttaatttgctc-tgaatgaatatgtgttgcag-----------------------------------------------------------------------------------

upper sequence: Vv05s0051g00340.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: PP1S52_245V6.1 (Physcomitrella patens), 5'ss of exon 7
GAAGACATTGTATAATGAATTGGAAGTTGTTGAGGGGATGAAGCTGGATAGAGGTTACATATCCCCTTATTTTATAACAAACCAGAAAACCCAAAAATGTgtaagtttttttttccttgtgactcgtttgattgacatatgtctggatgctgttacttcataattgaagtaatatgaaagaagcttatgtttcagtcactagctggtttaagtaacatcaacttgttcacttaaaactgagtgtccatatctatatactacag
 || || ||||  ||||||||||| ||||||||||| |||||||| || ||||| || || |||||||| || || || ||   ||| || || |||   ||  || | |   ||     | || || |   |||  |||||||     |  | | | | |    |   |    ||| |    | ||  ||| | ||   |                                                              
AAAAACTTTGTTCAATGAATTGGAGGTTGTTGAGGGTATGAAGCTCGACAGAGGATATATTTCCCCTTACTTCATTACCAATGCGAAGACACAGAAAGTGgtgtgtatctaaatcaaaacgccttgtatt-ctgat-tatgtctattctcgctcattgcttgg--ggtctgtgctgataactacctacatttgactctacaaag-----------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110686767|gb|EE064783.1|EE064783
EST:     GAGGTTACATATCCCCTTATTTTATAACAAACCAGAAAACCCAAAAATGT                         GAACTAGAAAATCCTCTTGTTCTAATCCATGAGAAGAAAATCTCGAATATA
genomic: GAGGTTACATATCCCCTTATTTTATAACAAACCAGAAAACCCAAAAATGTgtaagttttt ... tatactacagGAACTAGAAAATCCTCTTGTTCTAATCCATGAGAAGAAAATCTCGAATATA
EST: gi|30300026|gb|CB976820.1|CB976820
EST:     GAGGTTACATATCCCCTTATTTTATAACAAACCAGAAAACCCAAAAATGT                         GTACTAGAAAATCCTCTTGTTCTAATCCATGAGAAGAAAATCTCGAATATA
genomic: GAGGTTACATATCCCCTTATTTTATAACAAACCAGAAAACCCAAAAATGTgtaagttttt ... tatactacagGAACTAGAAAATCCTCTTGTTCTAATCCATGAGAAGAAAATCTCGAATATA
EST: gi|110691710|gb|EE070124.1|EE070124
EST:     GAGGTTACATATCCCCTTATTTTATAACAAACCAGAAAACCCAAAAATGT                         GAACTAGAAAATCCTCTTGTTCTAATCCATGAGAAGAAAATCTCGAATATA
genomic: GAGGTTACATATCCCCTTATTTTATAACAAACCAGAAAACCCAAAAATGTgtaagttttt ... tatactacagGAACTAGAAAATCCTCTTGTTCTAATCCATGAGAAGAAAATCTCGAATATA
EST: gi|110690897|gb|EE068383.1|EE068383
EST:     GAGGTTACATATCCCCTTATTTTATAACAAACCAGAAAACCCAAAAATGT                         GAACTAGAAAATCCTCTTGTTCTAATCCATGAGAAGAAAATCTCGAATATA
genomic: GAGGTTACATATCCCCTTATTTTATAACAAACCAGAAAACCCAAAAATGTgtaagttttt ... tatactacagGAACTAGAAAATCCTCTTGTTCTAATCCATGAGAAGAAAATCTCGAATATA
EST: gi|71873742|gb|DT022797.1|DT022797
EST:     GAGGTTACATATCCCCTTATTTTATAACAAACCAGAAAACCCAAAAATGT                         GAACTAGAAAATCCTCTTGTTCTAATCCATGAGAAGAAAATCTCGAATATA
genomic: GAGGTTACATATCCCCTTATTTTATAACAAACCAGAAAACCCAAAAATGTgtaagttttt ... tatactacagGAACTAGAAAATCCTCTTGTTCTAATCCATGAGAAGAAAATCTCGAATATA
EST: gi|77586617|gb|DV222437.1|DV222437
EST:     GAGGTTACATATCCCCTTATTTTATAACAAACCAGAAAACCCAAAAATGT                         GAACTAGAAAATCCTCTTGTTCTAATCCATGAGAAGAAAATCTCGAATATA
genomic: GAGGTTACATATCCCCTTATTTTATAACAAACCAGAAAACCCAAAAATGTgtaagttttt ... tatactacagGAACTAGAAAATCCTCTTGTTCTAATCCATGAGAAGAAAATCTCGAATATA