Sequence
atgc intronic sequence ATGC exonic sequenceGGAGAGCCCAGGTATCGTGCCAGCAGGTCGTCTTCCTAGATACAAGGAAGTGATACTCTTGAACGATTTGATTGATTGTGCCCGCCCGGGGGAAGAGATTgtaatacccttatgtctgcacttcttttatctggtttttgttgcacttgattatcctggttatgatagggattgccacctgaacttctgttacatgttccatgtgatttatttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0150g00390.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os11g29380.1 (Oryza sativa), 5'ss of exon 8
GGAGAGCCCAGGTATCGTGCCAGCAGGTCGTCTTCCTAGATACAAGGAAGTGATACTCTTGAACGATTTGATTGATTGTGCCCGCCCGGGGGAAGAGATTgtaatacccttatgtctgcacttcttttatctggtttttgttgcacttgattatcctggttatgatagggattgccacctgaacttctgttacatgttccatgtgatttatttcag
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GGAAAGCCCAGGAATTGTTCCTGCTGGCAGGCTTCCAAGATACAAGGAAGTGATACTTCTGAATGATTTGATTGACTGTGCTCGACCAGGAGAGGAAATTgtaag--tcttctgcatgtaccttttttattt--------ctacatcttattgtagaaagcatgttctaattgactatctg--cccatgttcag----------------------
upper sequence: Vv01s0150g00390.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G139894_T01 (Zea mays), 5'ss of exon 8
GGAGAGCCCAGGTATCGTGCCAGCAGGTCGTCTTCCTAGATACAAGGAAGTGATACTCTTGAACGATTTGATTGATTGTGCCCGCCCGGGGGAAGAGATTgtaatacccttatgtctgcacttcttttatctggtttttgttgcactt--gattatcctggttatgatagggattgccacctgaacttctgttacatgttccatgtgatttatttcag
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GGAAAGCCCAGGAATTGTTCCTGCTGGAAGGCTTCCCAGATACAAGGAAGTCATACTTCTGAATGATCTGATTGACTGTGCTCGTCCAGGAGAGGAGATTgtaatttttcttcacctaccatttgcttttc-atttcatattactttttgaattagactgacattcagtgttgctgtctccag-----------------------------------
upper sequence: Vv01s0150g00390.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA17G03920.1 (Glycine max), 5'ss of exon 7
GGAGAGCCCAGGTATCGTGCCAGCAGGTCGTCTTCCTAGATACAAGGAAGTGATACTCTTGAACGATTTGATTGATTGTGCCCGCCCGGGGGAAGAGATTgtaatacccttatgtctgcacttcttttatctggtttttgttgcacttgattatcctggttatgatagggattgccacctgaacttctgttacatgttccatgtgatttatttcag
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AGAGAGTCCAGGGATAGTTCCTGCAGGTCGACTTCCAAGATACAAGGAAGTGATACTATTAAATGATCTGATTGATTGTGCACGCCCTGGAGAAGAAATTgtatcatcttttactttga------ctcatcaattttttggccggcc-------cttagttgttatata-atgaccttcttaa--tcattttcttatttcag--------------
upper sequence: Vv01s0150g00390.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA07G36680.1 (Glycine max), 5'ss of exon 7
GGAGAGCCCAGGTATCGTGCCAGCAGGTCGTCTTCCTAGATACAAGGAAGTGATACTCTTGAACGATTTGATTGATTGTGCCCGCCCGGGGGAAGAGATTgtaatacccttatgtctgcacttcttttatctggtttttgttgcacttgattatcctggttatgatagggattgccacctgaacttctgttacatgttccatgtgatttatttcag
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AGAGAGTCCAGGAATAGTCCCTGCGGGTCGACTTCCAAGATACAAGGAAGTGATACTATTGAATGATCTGATTGATTGTGCTCGTCCTGGAGAAGAAATTgtatcatcttt-taccttgactcatt------aattttt--tgcccttgggtgttataga-atgattttcttaatcattt----tcttatttcag---------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37189746|gb|CF609095.1|CF609095EST: TGATACTCTTGAACGATTTGATTGATTGTGCCCGCCCGGGGGAAGAGATT GAGGTCACAGGTATTTACACGAATAATTTTGACCTCTCCCTGAATACGAAG
genomic: TGATACTCTTGAACGATTTGATTGATTGTGCCCGCCCGGGGGAAGAGATTgtaataccct ... tttatttcagGAGGTCACAGGTATTTACACGAATAATTTTGACCTCTCCCTGAATACGAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGAGAGCCCAGGTATCGTGCCAGCAGGTCGTCTTCCTAGATACAAGGAAGTGATACTCTTGAACGATTTGATTGATTGTGCCCGCCCGGGGGAAGAGATTgtaatacccttatgtctgcacttcttttatctggtttttgttgcacttgattatcctggttatgatagggattgccacctgaacttctgttacatgttccatgtgatttatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA