Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCGAAGTATGATAATGCATCGATAGATTTTCAGGTTGAGTTTTATAAAAGTGAGGGTTTAACACCATATTCTGAGGCTAAGCTTCCCATTACAAGTGgtaggtccaagatcattcttctctttgtttttattcggttttatctgttccatctttcattcagttttctggtttcatgctgggtttgcag

Basic information

species Vitis vinifera
transcript Vv00s0265g00120.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0265g00120.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA07G31680.1 (Glycine max), 5'ss of exon 7
GCTGCGAAGTATGATAATGCATCGATAGATTTTCAGGTTGAGTTTTATAAAAGTGAGGGTTTAACACCATATTCTGAGGCTAAGCTTCCCATTACAAGTGgtaggtccaagatcattcttctctttgtttttattcggttttatctgttccatctttcattcagttttctggtttcatgctgggtttgcag
||||  |||||||||||||| || || || |||||| | |||||||| || |  ||||| || || |||||| | ||||||||||||||  ||| |||||||||||  ||   | ||| | |  || | |    |  |||  | ||||| |||  ||  || |      |  |||||  |      | |||
GCTGGAAAGTATGATAATGCCTCTATTGACTTTCAGATAGAGTTTTACAAGAAAGAGGGATTGACCCCATATACAGAGGCTAAGCTTCCTCTTATAAGTGgtaggtaaaactgccttcctgtacttatctaggatgagttgcacctgtttcattgtttttttaaaaacatt-tttcaaacg----ctacag

upper sequence: Vv00s0265g00120.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA13G24770.1 (Glycine max), 5'ss of exon 7
GCTGCGAAGTATGATAATGCATCGATAGATTTTCAGGTTGAGTTTTATAAAAGTGAGGGTTTAACACCATATTCTGAGGCTAAGCTTCCCATTACAAGTGgtaggtccaagatcattcttctctttgtttttattcggttttatctgttccatctttcattcagttttctggtttca-tgctgggtttgcag
||||  |||||||| ||||| || || || |||||| | |||||||| || | |||||| || ||||||||  | ||||||||||||||  ||| |||||||||||  ||   | ||| | | ||| | |    |  |||  | ||||| |||  ||  || |      || ||  | |||||         
GCTGGAAAGTATGAAAATGCCTCTATTGACTTTCAGATAGAGTTTTACAAGAATGAGGGATTGACACCATACACAGAGGCTAAGCTTCCTCTTATAAGTGgtaggtagaactgccttcctgtatttatctaggatgagttgcacctgtttcattgtttttttaaaaacttgtttcaaatgctgcag------