1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GAGCCTTGGCATCTTGGGCGGGAAACCTGGTGCTTCCACTTACATTGTTGGTGTGCAAGATGAAAAAGCATTTTACCTCGACCCGCATGAAGCCCAGTCGgtatagcacaattctaataacttctttccatctagtcactaccatacaatttagaaggttatatctacataggttttgaaaggcatacttttgtcaagtt...
species | Vitis vinifera |
transcript | Vv00s0215g00030.t01 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTGTGCAAGATGAAAAAGCATTTTACCTCGACCCGCATGAAGCCCAGTCG GTAGTCGATATTAGGAGAGAAAATCTAGAGGCTGATACATCATCATACCACEST: gi|110387776|gb|EC952472.1|EC952472
genomic: GTGTGCAAGATGAAAAAGCATTTTACCTCGACCCGCATGAAGCCCAGTCGgtatagcaca ... ggttcatcagGTAGTCGATATTAGGAGAGAAAATCTAGAGGCTGATACATCATCATACCAC
EST: GTGTGCAAGATGAAAAAGCATTTTACCTCGACCCGCATGAAGCCCAGTCG GTAGTCGATATTAGGAGAGAAAATCTAGAGGCTGATACATCATCATACCACEST: gi|30136940|gb|CB922278.1|CB922278
genomic: GTGTGCAAGATGAAAAAGCATTTTACCTCGACCCGCATGAAGCCCAGTCGgtatagcaca ... ggttcatcagGTAGTCGATATTAGGAGAGAAAATCTAGAGGCTGATACATCATCATACCAC
EST: GTGTGCAAGATGAAAAAGCATTTTACCTCGACCCGCATGAAGCCCAGTCG GTAGTCGATATTAGGAGAGAAAATCTAGAGGCTGATACATCATCATACCACEST: gi|30251919|gb|CB969652.1|CB969652
genomic: GTGTGCAAGATGAAAAAGCATTTTACCTCGACCCGCATGAAGCCCAGTCGgtatagcaca ... ggttcatcagGTAGTCGATATTAGGAGAGAAAATCTAGAGGCTGATACATCATCATACCAC
EST: GTGTGCAAGATGAAAAAGCATTTTACCTCGACCCGCATGAAGCCCAGTCG GTAGTCGATATTAGGAGAGAAAATCTAGAGGCTGATACATCATCATACCACEST: gi|30251996|gb|CB968635.1|CB968635
genomic: GTGTGCAAGATGAAAAAGCATTTTACCTCGACCCGCATGAAGCCCAGTCGgtatagcaca ... ggttcatcagGTAGTCGATATTAGGAGAGAAAATCTAGAGGCTGATACATCATCATACCAC
EST: GTGTGCAAGATGAAAAAGCATTTTACCTCGACCCGCATGAAGCCCAGTCG GTAGTCGATATTAGGAGAGAAAATCTAGAGGCTGATACATCATCATACCACEST: gi|33401751|gb|CF207378.1|CF207378
genomic: GTGTGCAAGATGAAAAAGCATTTTACCTCGACCCGCATGAAGCCCAGTCGgtatagcaca ... ggttcatcagGTAGTCGATATTAGGAGAGAAAATCTAGAGGCTGATACATCATCATACCAC
EST: GTGTGCAAGATGAAAAAGCATTTTACCTCGACCCGCATGAAGCCCAGTCG GTAGTCGATATTAGGAGAGAAAATCTAGAGGCTGATACATCATCATACCAC
genomic: GTGTGCAAGATGAAAAAGCATTTTACCTCGACCCGCATGAAGCCCAGTCGgtatagcaca ... ggttcatcagGTAGTCGATATTAGGAGAGAAAATCTAGAGGCTGATACATCATCATACCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGCCTTGGCATCTTGGGCGGGAAACCTGGTGCTTCCACTTACATTGTTGGTGTGCAAGATGAAAAAGCATTTTACCTCGACCCGCATGAAGCCCAGTCGgtatagcacaattctaataacttctttccatctagtcactaccatacaatttagaaggttatatctacataggttttgaaaggcatacttttgtcaagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaggca